Lus10035583.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10035583.g T228929_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.787 0.825
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.787 0.825
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.787 0.825
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.753 0.684
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.689 0.579
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.689 0.579
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.669 0.561
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.669 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10035583 Homeodomain 56 112

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP24 Arabidopsis thaliana AT1G30210 D
BGIOSGA025162 Oryza indica BGIOSGA025162 I
Bo5g062580 Brassica oleracea Bo5g062580 I
Bo6g107240 Brassica oleracea Bo6g107240 I
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I
Bra032365 Brassica rapa Bra032365 I
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I
Cla020670 Citrullus lanatus Cla020670 I
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I
Lus10017856.g Linum usitatissimum Lus10017856.g I
Lus10038512.g Linum usitatissimum Lus10038512.g I
Lus10042962.g Linum usitatissimum Lus10042962.g I
mgf014960m Mimulus guttatus mgf014960m I
OBART07G03380 Oryza barthii OBART07G03380 I
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I
ONIVA07G01330 Oryza nivara ONIVA07G01330 I
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I
OS07G0152000 Oryza sativa OS07G0152000 I
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I
BRC1 Vitis vinifera VIT_17s0000g04180 I