Lus10042962.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10042962.g T344909_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.898 0.212
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.898 0.212
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.898 0.212
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.898 0.212
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042962 TCP 144 341
Lus10042962 TCP 347 451

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.927
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.927
mgf025386m Mimulus guttatus mgf025386m I 0.926
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.924
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.922
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.922
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.922
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.921
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.920
Bo6g107240 Brassica oleracea Bo6g107240 I 0.916
Cla020670 Citrullus lanatus Cla020670 I 0.915
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.914
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.909
OBART07G03380 Oryza barthii OBART07G03380 I 0.904
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.904
Bra032365 Brassica rapa Bra032365 I 0.899
TCP24 Arabidopsis thaliana AT1G30210 D 0.898
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.898
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.898
Bo5g062580 Brassica oleracea Bo5g062580 I 0.897
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.889
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.879
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.877
OS07G0152000 Oryza sativa OS07G0152000 I 0.877
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.876
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.876
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.876
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.876
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.866
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.840
mgf014960m Mimulus guttatus mgf014960m I 0.824
GLYMA16G05840 Glycine max GLYMA16G05840 N 0.822