MDP0000841379 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000841379 T229118_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.843 0.796
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000841379 Homeodomain 393 444

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006371 Calypte anna Aan_R006371 I 0.000
Afo_R010037 Aptenodytes forsteri Afo_R010037 I 0.000
Alligator_sinensis_CCG017947.1 Alligator sinensis Alligator_sinensis_CCG017947.1 I 0.000
Aqu1.203581 Amphimedon queenslandica Aqu1.203581 I 0.000
Aqu1.204705 Amphimedon queenslandica Aqu1.204705 I 0.000
Aqu1.224590 Amphimedon queenslandica Aqu1.224590 I 0.000
Brh_R005100 Buceros rhinoceros Brh_R005100 I 0.000
CapteG160905 Capitella teleta CapteG160905 I 0.000
Cflo_12808--XP_001122269.1_APIME Camponotus floridanus Cflo_12808--XP_001122269.1_APIME I 0.000
CGI_10021920 Crassostrea gigas CGI_10021920 I 0.000
Cmyd_10002310 Chelonia mydas Cmyd_10002310 I 0.000
DNMT1 Anolis carolinensis ENSACAG00000003948 I 0.000
ENSAMEG00000011823 Ailuropoda melanoleuca ENSAMEG00000011823 I 0.000
ENSAMXG00000012182 Astyanax mexicanus ENSAMXG00000012182 I 0.000
DNMT1 Bos taurus ENSBTAG00000002736 I 0.000
DNMT1 Canis familiaris ENSCAFG00000017892 I 0.000
DNMT1 Choloepus hoffmanni ENSCHOG00000009490 I 0.000
DNMT1 Callithrix jacchus ENSCJAG00000005794 I 0.000
DNMT1 Cavia porcellus ENSCPOG00000019557 I 0.000
ENSCSAG00000007378 Chlorocebus sabaeus ENSCSAG00000007378 I 0.000
ENSCSAVG00000006002 Ciona savignyi ENSCSAVG00000006002 I 0.000
dnmt1 Danio rerio ENSDARG00000030756 I 0.000
DNMT1 Dasypus novemcinctus ENSDNOG00000003313 I 0.000
Dnmt1 Dipodomys ordii ENSDORG00000014116 I 0.000
DNMT1 Equus caballus ENSECAG00000026909 I 0.000
DNMT1 Echinops telfairi ENSETEG00000012574 I 0.000
ENSFALG00000007760 Ficedula albicollis ENSFALG00000007760 I 0.000
DNMT1 Felis catus ENSFCAG00000012246 I 0.000
DNMT1 Homo sapiens ENSG00000130816 D 0.000
dnmt1 Gasterosteus aculeatus ENSGACG00000013741 I 0.000
ENSGALG00000028997 Gallus gallus ENSGALG00000028997 I 0.000
DNMT1 Gorilla gorilla ENSGGOG00000016574 I 0.000
ENSGMOG00000003491 Gadus morhua ENSGMOG00000003491 I 0.000
DNMT1 Loxodonta africana ENSLAFG00000002818 I 0.000
ENSLOCG00000007421 Lepisosteus oculatus ENSLOCG00000007421 I 0.000
ENSMEUG00000012650 Macropus eugenii ENSMEUG00000012650 I 0.000
DNMT1 Microcebus murinus ENSMICG00000010231 I 0.000
DNMT1 Myotis lucifugus ENSMLUG00000001347 I 0.000
DNMT1 Macaca mulatta ENSMMUG00000014604 I 0.000
DNMT1 Monodelphis domestica ENSMODG00000005463 I 0.000
ENSMPUG00000006829 Mustela putorius furo ENSMPUG00000006829 I 0.000
Dnmt1 Mus musculus ENSMUSG00000004099 I 0.000
ENSNLEG00000012092 Nomascus leucogenys ENSNLEG00000012092 I 0.000
ENSOANG00000012255 Ornithorhynchus anatinus ENSOANG00000012255 I 0.000
ENSOARG00000015380 Ovis aries ENSOARG00000015380 I 0.000
ENSOCUG00000008415 Oryctolagus cuniculus ENSOCUG00000008415 I 0.000
DNMT1 Otolemur garnettii ENSOGAG00000001265 I 0.000
ENSONIG00000001574 Oreochromis niloticus ENSONIG00000001574 I 0.000
DNMT1 Ochotona princeps ENSOPRG00000007032 I 0.000
dnmt1 Oryzias latipes ENSORLG00000005582 I 0.000
ENSP00000352516 Macaca fascicularis ENSP00000352516 I 0.000
ENSP00000352516-D1 Bos grunniens ENSP00000352516-D1 I 0.000
ENSPANG00000001264 Papio anubis ENSPANG00000001264 I 0.000
DNMT1 Procavia capensis ENSPCAG00000011023 I 0.000
ENSPFOG00000005624 Poecilia formosa ENSPFOG00000005624 I 0.000
ENSPMAG00000002148 Petromyzon marinus ENSPMAG00000002148 I 0.000
ENSPPYG00000009545 Pongo abelii ENSPPYG00000009545 I 0.000
ENSPSIG00000002916 Pelodiscus sinensis ENSPSIG00000002916 I 0.000
DNMT1 Pan troglodytes ENSPTRG00000010461 I 0.000
DNMT1 Pteropus vampyrus ENSPVAG00000003676 I 0.000
Dnmt1 Rattus norvegicus ENSRNOG00000039859 I 0.000
ENSSHAG00000008894 Sarcophilus harrisii ENSSHAG00000008894 I 0.000
DNMT1 Sus scrofa ENSSSCG00000013659 I 0.000
ENSSTOG00000010841 Ictidomys tridecemlineatus ENSSTOG00000010841 I 0.000
ENSTGUG00000013708 Taeniopygia guttata ENSTGUG00000013708 I 0.000
dnmt1 Tetraodon nigroviridis ENSTNIG00000018567 I 0.000
dnmt1 Takifugu rubripes ENSTRUG00000008132 I 0.000
DNMT1 Tursiops truncatus ENSTTRG00000003178 I 0.000
DNMT1 Vicugna pacos ENSVPAG00000006117 I 0.000
ENSXMAG00000018063 Xiphophorus maculatus ENSXMAG00000018063 I 0.000
e_gw.24.105.1 Branchiostoma floridae e_gw.24.105.1 I 0.000
GB47348 Apis mellifera GB47348 I 0.000
GB48403 Apis mellifera GB48403 I 0.000
Gfo_R002685 Geospiza fortis Gfo_R002685 I 0.000
HelroG116156 Helobdella robusta HelroG116156 I 0.000
ISCW001108 Ixodes scapularis ISCW001108 I 0.000
LotgiG171288 Lottia gigantea LotgiG171288 I 0.000
Myotis_brandtii_DNMT1_10007965 Myotis brandtii Myotis_brandtii_DNMT1_10007965 I 0.000
NEMVEDRAFT_v1g125496 Nematostella vectensis NEMVEDRAFT_v1g125496 I 0.000
NV11649 Nasonia vitripennis NV11649 I 0.000
Ocbimv22034501m.g Octopus bimaculoides Ocbimv22034501m.g I 0.000
Ogr12994 Ophisaurus gracilis Ogr12994 I 0.000
Pvit_03471 Pogona vitticeps Pvit_03471 I 0.000
Sakowv30005306m.g Saccoglossus kowalevskii Sakowv30005306m.g I 0.000
dnmt1.S Xenopus laevis XB-GENE-17332488 I 0.000
dnmt1 Xenopus tropicalis XB-GENE-965562 I 0.000
dnmt1.L Xenopus laevis XB-GENE-965566 I 0.000
XP_002155714.1 Hydra magnipapillata XP_002155714.1 I 0.000