orange1.1g026809m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g026809m.g T229168_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.833 0.772
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.833 0.772
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.820 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g026809m Homeodomain 92 153
orange1.1g027068m Homeodomain 92 153
orange1.1g027250m Homeodomain 92 153
orange1.1g028506m Homeodomain 92 153
orange1.1g031304m Homeodomain 21 82

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G55690 Arabidopsis thaliana AT5G55690 N
AGL82 Arabidopsis thaliana AT5G58890 N
Bo3g021400 Brassica oleracea Bo3g021400 N
Bostr.26833s0688 Boechera stricta Bostr.26833s0688 N
Bra002611 Brassica rapa Bra002611 N
Bra028965 Brassica rapa Bra028965 N
Cagra.0891s0086 Capsella grandiflora Cagra.0891s0086 N
Carubv10027564m.g Capsella rubella Carubv10027564m.g N
Carubv10027979m.g Capsella rubella Carubv10027979m.g N
fgenesh1_pg.C_scaffold_8001596 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001596 N
AGL82 Arabidopsis lyrata scaffold_802501.1 N
Thhalv10015661m.g Eutrema salsugineum Thhalv10015661m.g N