Thhalv10015677m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10015677m.g T229571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.860 0.912
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.860 0.912
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.782 0.737
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.782 0.737
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.782 0.737
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.777 0.667
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.777 0.667
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.760 0.684
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.744 0.667
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.744 0.667
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.740 0.702
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.740 0.702
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.740 0.702
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.740 0.702
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.733 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015677m Homeodomain 51 107

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

610 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001736 Aedes aegypti AAEL001736 N
Alligator_sinensis_CCG004871.1 Alligator sinensis Alligator_sinensis_CCG004871.1 N
BGLB013051 Biomphalaria glabrata BGLB013051 N
CapteG164570 Capitella teleta CapteG164570 N
CGI_10026455 Crassostrea gigas CGI_10026455 N
Cmyd_10002903 Chelonia mydas Cmyd_10002903 N
CPIJ016312 Culex quinquefasciatus CPIJ016312 N
CpipJ_CPIJ016312 Culex pipiens CpipJ_CPIJ016312 N
DAPPUDRAFT_111472 Daphnia pulex DAPPUDRAFT_111472 N
ENSAMEG00000008949 Ailuropoda melanoleuca ENSAMEG00000008949 N
ENSAMXG00000008885 Astyanax mexicanus ENSAMXG00000008885 N
ENSAPLG00000007652 Anas platyrhynchos ENSAPLG00000007652 N
PRDM13 Bos taurus ENSBTAG00000006095 N
PRDM13 Canis familiaris ENSCAFG00000023314 N
PRDM13 Choloepus hoffmanni ENSCHOG00000011613 N
PRDM13 Callithrix jacchus ENSCJAG00000001421 N
ENSCSAG00000014622 Chlorocebus sabaeus ENSCSAG00000014622 N
prdm13 Danio rerio ENSDARG00000078701 N
PRDM13 Dasypus novemcinctus ENSDNOG00000006520 N
ENSDORG00000003558 Dipodomys ordii ENSDORG00000003558 N
PRDM13 Echinops telfairi ENSETEG00000004709 N
PRDM13 Felis catus ENSFCAG00000010288 N
PRDM13 Homo sapiens ENSG00000112238 N
prdm13 Gasterosteus aculeatus ENSGACG00000005032 N
PRDM13 Gorilla gorilla ENSGGOG00000006947 N
ENSGMOG00000006125 Gadus morhua ENSGMOG00000006125 N
ENSLACG00000008814 Latimeria chalumnae ENSLACG00000008814 N
PRDM13 Loxodonta africana ENSLAFG00000012439 N
ENSLOCG00000017084 Lepisosteus oculatus ENSLOCG00000017084 N
ENSMICG00000001097 Microcebus murinus ENSMICG00000001097 N
PRDM13 Myotis lucifugus ENSMLUG00000001899 N
PRDM13 Monodelphis domestica ENSMODG00000018089 N
ENSMPUG00000001648 Mustela putorius furo ENSMPUG00000001648 N
Prdm13 Mus musculus ENSMUSG00000040478 N
ENSNLEG00000013845 Nomascus leucogenys ENSNLEG00000013845 N
ENSOARG00000011775 Ovis aries ENSOARG00000011775 N
PRDM13 Oryctolagus cuniculus ENSOCUG00000003216 N
PRDM13 Otolemur garnettii ENSOGAG00000031927 N
ENSONIG00000000112 Oreochromis niloticus ENSONIG00000000112 N
ENSP00000352819 Macaca fascicularis ENSP00000352819 N
ENSP00000352819-D1 Bos grunniens ENSP00000352819-D1 N
ENSPANG00000017638 Papio anubis ENSPANG00000017638 N
ENSPFOG00000019371 Poecilia formosa ENSPFOG00000019371 N
ENSPPYG00000016866 Pongo abelii ENSPPYG00000016866 N
ENSPSIG00000002567 Pelodiscus sinensis ENSPSIG00000002567 N
PRDM13 Pan troglodytes ENSPTRG00000018445 N
PRDM13 Pteropus vampyrus ENSPVAG00000001695 N
Prdm13 Rattus norvegicus ENSRNOG00000007683 N
ENSSHAG00000013340 Sarcophilus harrisii ENSSHAG00000013340 N
PRDM13 Sus scrofa ENSSSCG00000004354 N
ENSSTOG00000016567 Ictidomys tridecemlineatus ENSSTOG00000016567 N
prdm13 Tetraodon nigroviridis ENSTNIG00000006867 N
prdm13 Takifugu rubripes ENSTRUG00000000334 N
PRDM13 Tursiops truncatus ENSTTRG00000004705 N
ENSXMAG00000002547 Xiphophorus maculatus ENSXMAG00000002547 N
CG13296 Drosophila melanogaster FBgn0035687 N
GA12179 Drosophila pseudoobscura FBgn0072227 N
GF23530 Drosophila ananassae FBgn0100524 N
GG15330 Drosophila erecta FBgn0107582 N
GL15563 Drosophila persimilis FBgn0153167 N
GM14767 Drosophila sechellia FBgn0169688 N
GD13944 Drosophila simulans FBgn0185640 N
GK17273 Drosophila willistoni FBgn0219272 N
GE21548 Drosophila yakuba FBgn0238803 N
GB51085 Apis mellifera GB51085 N
gw.79.7.1 Branchiostoma floridae gw.79.7.1 N
HelroG144862 Helobdella robusta HelroG144862 N
HHAL009600-PA Halyomorpha halys HHAL009600-PA N
L798_05013 Zootermopsis nevadensis L798_05013 N
LotgiG130257 Lottia gigantea LotgiG130257 N
MESCA000924 Megaselia scalaris MESCA000924 N
NEMVEDRAFT_v1g66221 Nematostella vectensis NEMVEDRAFT_v1g66221 N
NV14899 Nasonia vitripennis NV14899 N
Ocbimv22009191m.g Octopus bimaculoides Ocbimv22009191m.g N
Ogr12758 Ophisaurus gracilis Ogr12758 N
PHUM605290 Pediculus humanus PHUM605290 N
RPRC014451 Rhodnius prolixus RPRC014451 N
Sakowv30027334m.g Saccoglossus kowalevskii Sakowv30027334m.g N
SMAR008272 Strigamia maritima SMAR008272 N
SMAR010327 Strigamia maritima SMAR010327 N
SPU_012050 Strongylocentrotus purpuratus SPU_012050 N
TC014373 Tribolium castaneum TC014373 N
tetur10g01540 Tetranychus urticae tetur10g01540 N
prdm13 Xenopus tropicalis XB-GENE-960155 N
YQE_11778 Dendroctonus ponderosae YQE_11778 N