CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0075360
(
Schistosoma japonicum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Sjc_0075360
T230178_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.671
0.483
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.671
0.483
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.671
0.483
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.671
0.483
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.671
0.483
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.671
0.483
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.671
0.483
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.671
0.483
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.671
0.483
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.652
0.379
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.652
0.379
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.652
0.379
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000007088
Homeodomain
145
175
RKSRTAFTDLQLNELEKMFDRQKYLSVXXTK
Links
Other
Homeodomain
family TFs
Other
Schistosoma japonicum
TFs
1196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB02848.1
Alternaria brassicicola
AB02848.1
I
0.000
BAUCODRAFT_113280
Baudoinia compniacensis
BAUCODRAFT_113280
I
0.000
BBA_00050
Beauveria bassiana
BBA_00050
I
0.000
Bcin15g01900
Botrytis cinerea
Bcin15g01900
I
0.000
ACLA_035940
Aspergillus clavatus
CADACLAG00003762
I
0.000
AFUA_3G08010
Aspergillus fumigatus
CADAFUAG00005137
I
0.000
ANIA_02919
Aspergillus nidulans
CADANIAG00010168
N
0.000
NFIA_069130
Neosartorya fischeri
CADNFIAG00006258
I
0.000
CFIO01_12627
Colletotrichum fioriniae
CFIO01_12627
I
0.000
CH063_12017
Colletotrichum higginsianum
CH063_12017
I
0.000
CHGG_00776
Chaetomium globosum
CHGG_00776
I
0.000
CIMG_02350
Coccidioides immitis
CIMG_02350
I
0.000
CMQ_2957
Grosmannia clavigera
CMQ_2957
I
0.000
Cob_12302
Colletotrichum orbiculare
Cob_12302
I
0.000
COCC4DRAFT_132281
Bipolaris maydis
COCC4DRAFT_132281
I
0.000
COCCADRAFT_34587
Bipolaris zeicola
COCCADRAFT_34587
I
0.000
COCMIDRAFT_89546
Bipolaris oryzae
COCMIDRAFT_89546
I
0.000
COCSADRAFT_161815
Bipolaris sorokiniana
COCSADRAFT_161815
I
0.000
COCVIDRAFT_94495
Bipolaris victoriae
COCVIDRAFT_94495
I
0.000
CPC735_039930
Coccidioides posadasii
CPC735_039930
I
0.000
CSUB01_02419
Colletotrichum sublineola
CSUB01_02419
I
0.000
CTHT_0059610
Chaetomium thermophilum
CTHT_0059610
I
0.000
DOTSEDRAFT_40082
Dothistroma septosporum
DOTSEDRAFT_40082
I
0.000
estExt_fgenesh1_pg.C_chr_11362
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_11362
I
0.000
estExt_Genewise1.C_sca_1_chr1_3_00506
Nectria haematococca
estExt_Genewise1.C_sca_1_chr1_3_00506
I
0.000
estExt_Genewise1Plus.C_40603
Cryphonectria parasitica
estExt_Genewise1Plus.C_40603
I
0.000
EURHEDRAFT_374243
Aspergillus ruber
EURHEDRAFT_374243
I
0.000
e_gw1.7.723.1
Neurospora discreta
e_gw1.7.723.1
I
0.000
F503_00580
Ophiostoma piceae uamh
F503_00580
I
0.000
FFUJ_01127
Fusarium fujikuroi
FFUJ_01127
I
0.000
fgenesh1_pg.C_scaffold_1001214
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_1001214
I
0.000
fgenesh1_pg.C_scaffold_3000316
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_3000316
I
0.000
FGRRES_15757
Fusarium graminearum
FGRRES_15757
I
0.000
FOXG_00444
Fusarium oxysporum
FOXG_00444
I
0.000
FPSE_04598
Fusarium pseudograminearum
FPSE_04598
I
0.000
FVEG_01067
Fusarium verticillioides
FVEG_01067
I
0.000
GGTG_10245
Gaeumannomyces graminis
GGTG_10245
I
0.000
GLRG_04524
Colletotrichum graminicola
GLRG_04524
I
0.000
HCBG_06660
Histoplasma capsulatum
HCBG_06660
I
0.000
HMPREF1624_01125
Sporothrix schenckii
HMPREF1624_01125
I
0.000
LEMA_P025640.1
Leptosphaeria maculans
LEMA_P025640.1
I
0.000
M7I_4857
Glarea lozoyensis
M7I_4857
I
0.000
MAC_03065
Metarhizium acridum
MAC_03065
I
0.000
MAJ_00678
Metarhizium majus
MAJ_00678
I
0.000
MANI_112562
Metarhizium anisopliae
MANI_112562
I
0.000
MAPG_03212
Magnaporthe poae
MAPG_03212
I
0.000
MBM_02240
Marssonina brunnea
MBM_02240
I
0.000
MBR_03431
Metarhizium brunneum
MBR_03431
I
0.000
MGG_04428
Magnaporthe oryzae
MGG_04428
I
0.000
MGU_02765
Metarhizium guizhouense
MGU_02765
I
0.000
MYCFIDRAFT_213472
Pseudocercospora fijiensis
MYCFIDRAFT_213472
I
0.000
Mycgr3G107598
Zymoseptoria tritici
Mycgr3G107598
I
0.000
NCU09333
Neurospora crassa
NCU09333
D
0.000
NechaG57385
Fusarium solani
NechaG57385
I
0.000
NEUTE1DRAFT_105772
Neurospora tetrasperma
NEUTE1DRAFT_105772
I
0.000
OCS_03657
Ophiocordyceps sinensis
OCS_03657
I
0.000
OIDMADRAFT_127716
Oidiodendron maius
OIDMADRAFT_127716
I
0.000
PABG_03764
Paracoccidioides brasiliensis
PABG_03764
I
0.000
PEX1_057980
Penicillium expansum
PEX1_057980
I
0.000
PFICI_01390
Pestalotiopsis fici
PFICI_01390
I
0.000
PTRG_07931
Pyrenophora triticirepentis
PTRG_07931
I
0.000
PTT_11966
Pyrenophora teres
PTT_11966
I
0.000
PVAR5_5909
Byssochlamys spectabilis
PVAR5_5909
I
0.000
S40285_03272
Stachybotrys chlorohalonata
S40285_03272
I
0.000
S40288_01364
Stachybotrys chartarum
S40288_01364
I
0.000
SAPIO_CDS8963
Scedosporium apiospermum
SAPIO_CDS8963
I
0.000
SBOR_5885
Sclerotinia borealis
SBOR_5885
I
0.000
SEPMUDRAFT_146274
Sphaerulina musiva
SEPMUDRAFT_146274
I
0.000
SETTUDRAFT_160143
Setosphaeria turcica
SETTUDRAFT_160143
I
0.000
SMAC_08482
Sordaria macrospora
SMAC_08482
I
0.000
SNOG_15249
Stagonospora nodorum
SNOG_15249
I
0.000
SNOG_15249
Phaeosphaeria nodorum
SNOG_15249
I
0.000
SPBR_08152
Sporothrix brasiliensis
SPBR_08152
I
0.000
THITE_2113340
Thielavia terrestris
THITE_2113340
I
0.000
TRIATDRAFT_83090
Trichoderma atroviride
TRIATDRAFT_83090
I
0.000
TRIREDRAFT_75418
Trichoderma reesei
TRIREDRAFT_75418
I
0.000
TRIVIDRAFT_88565
Trichoderma virens
TRIVIDRAFT_88565
I
0.000
UCREL1_1716
Eutypa lata
UCREL1_1716
I
0.000
UCRNP2_5297
Neofusicoccum parvum
UCRNP2_5297
I
0.000
UCRPA7_7219
Togninia minima
UCRPA7_7219
I
0.000
VDAG_03150
Verticillium dahliae
VDAG_03150
I
0.000
VDBG_05992
Verticillium alfalfae
VDBG_05992
I
0.000
VDBG_05992
Verticillium albo atrum
VDBG_05992
I
0.000
VHEMI03893
Torrubiella hemipterigena
VHEMI03893
I
0.000
X797_003933
Metarhizium robertsii
X797_003933
I
0.000