six3.L (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-478765 T230426_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAF63242 Homeodomain 165 221
AAI69654 Homeodomain 165 221
AAI69660 Homeodomain 165 221

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022472 Oryza indica BGIOSGA022472 N
BGIOSGA022479 Oryza indica BGIOSGA022479 N
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I
MTR_3g105480 Medicago truncatula MTR_3g105480 I
MTR_3g105510 Medicago truncatula MTR_3g105510 I
OBART06G06220 Oryza barthii OBART06G06220 N
OBART06G06230 Oryza barthii OBART06G06230 N
OBART06G07840 Oryza barthii OBART06G07840 N
OGLUM06G06540 Oryza glumaepatula OGLUM06G06540 N
OGLUM06G06550 Oryza glumaepatula OGLUM06G06550 N
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N
OMERI03G32220 Oryza meridionalis OMERI03G32220 N
OMERI06G09430 Oryza meridionalis OMERI06G09430 N
ONIVA06G07220 Oryza nivara ONIVA06G07220 N
ONIVA06G09060 Oryza nivara ONIVA06G09060 N
ORGLA06G0057300 Oryza glaberrima ORGLA06G0057300 N
ORGLA06G0057400 Oryza glaberrima ORGLA06G0057400 N
ORUFI06G06500 Oryza rufipogon ORUFI06G06500 N
ORUFI06G08090 Oryza rufipogon ORUFI06G08090 N
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I
Si008104m.g Setaria italica Si008104m.g I
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I