HDID_0000394301 (Hymenolepis diminuta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HDID_0000394301 T234248_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.858 0.842
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.851 0.877
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.835 0.842
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.835 0.842
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.835 0.842
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.835 0.842
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.835 0.842
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.835 0.842
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.835 0.842
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.835 0.842
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.835 0.842
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.801 0.772
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.801 0.772
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.801 0.772
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.801 0.772
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.801 0.772
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.801 0.772
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.801 0.772
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.801 0.772
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.801 0.772
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.801 0.772
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.801 0.772
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.801 0.772
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.801 0.772
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.801 0.772
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.801 0.772
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.801 0.772
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.801 0.772
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.801 0.772
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.801 0.772
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.801 0.772
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.801 0.772
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.801 0.772
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.801 0.754
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.801 0.754
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.797 0.737
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.793 0.789
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.793 0.789
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.793 0.789
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.793 0.789
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.793 0.789
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.793 0.772
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.793 0.772
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.793 0.772
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.793 0.772
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.793 0.772
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.787 0.789
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.787 0.789
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.787 0.789
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.772 0.702
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.772 0.702
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.772 0.702
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.772 0.702
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.772 0.702
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.772 0.702
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.768 0.754
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.763 0.737
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.759 0.737
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.755 0.772
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.755 0.772
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.755 0.772
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.755 0.772
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.755 0.772
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.755 0.772
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.755 0.772
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.612 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000394301-mRNA-1 Homeodomain 160 216

Links

Other Homeodomain family TFs
Other Hymenolepis diminuta TFs

834 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000236 Aedes aegypti AAEL000236 I
AALB006646 Anopheles albimanus AALB006646 I
AARA001108 Anopheles arabiensis AARA001108 I
AATE003062 Anopheles atroparvus AATE003062 I
ACAC_0000772401 Angiostrongylus cantonensis ACAC_0000772401 I
ACEP16720 Atta cephalotes ACEP16720 I
ACHR005020 Anopheles christyi ACHR005020 I
ACOC_0000013301 Angiostrongylus costaricensis ACOC_0000013301 I
ACUA020854 Anopheles culicifacies ACUA020854 I
ACYPI002885 Acyrthosiphon pisum ACYPI002885 I
ADIR000975 Anopheles dirus ADIR000975 I
AEPI005796 Anopheles epiroticus AEPI005796 I
AFAF018179 Anopheles farauti AFAF018179 I
AFUN011568 Anopheles funestus AFUN011568 I
AGAP000069 Anopheles gambiae AGAP000069 I
Alligator_sinensis_CCG003246.1 Alligator sinensis Alligator_sinensis_CCG003246.1 N
AMAM011474 Anopheles maculatus AMAM011474 I
AMEC012184 Anopheles melas AMEC012184 I
AMEM007373 Anopheles merus AMEM007373 I
AMIN002134 Anopheles minimus AMIN002134 I
ANCCAN_30535 Ancylostoma caninum ANCCAN_30535 I
AQUA008315 Anopheles quadriannulatus AQUA008315 I
ASIS005525 Anopheles sinensis ASIS005525 I
ASTEI06209 Anopheles stephensi ASTEI06209 I
ASU_00906 Ascaris suum ASU_00906 I
BGIBMGA001488 Bombyx mori BGIBMGA001488 I
BGLB003447 Biomphalaria glabrata BGLB003447 I
BTMF_0001614201 Brugia timori BTMF_0001614201 I
BXY_1193200 Bursaphelenchus xylophilus BXY_1193200 I
CapteG111555 Capitella teleta CapteG111555 I
CapteG148596 Capitella teleta CapteG148596 N
CapteG40198 Capitella teleta CapteG40198 N
CapteG82802 Capitella teleta CapteG82802 I
CBG12232 Caenorhabditis briggsae CBG12232 I
CBN31271 Caenorhabditis brenneri CBN31271 I
Cflo_07366--XP_001121752.1_APIME Camponotus floridanus Cflo_07366--XP_001121752.1_APIME I
CGI_10003726 Crassostrea gigas CGI_10003726 I
CGOC_0000329701 Cylicostephanus goldi CGOC_0000329701 I
CJA06474 Caenorhabditis japonica CJA06474 N
CLEC001579 Cimex lectularius CLEC001579 I
Cmyd_10015602 Chelonia mydas Cmyd_10015602 N
CPIJ009525 Culex quinquefasciatus CPIJ009525 I
CpipJ_CPIJ009525 Culex pipiens CpipJ_CPIJ009525 I
CRE23967 Caenorhabditis remanei CRE23967 I
C_00890 Schistosoma haematobium C_00890 N
D915_07563 Fasciola hepatica D915_07563 I
D917_06283 Trichinella nativa D917_06283 I
D918_04073 Trichuris suis D918_04073 I
DAPPUDRAFT_50302 Daphnia pulex DAPPUDRAFT_50302 I
DICVIV_08747 Dictyocaulus viviparus DICVIV_08747 I
DME_0000296101 Dracunculus medinensis DME_0000296101 I
ECANG7_07537 Echinococcus canadensis ECANG7_07537 I
ECANG7_08418 Echinococcus canadensis ECANG7_08418 I
EEL_0000313101 Elaeophora elaphi EEL_0000313101 I
EmuJ_001141600 Echinococcus multilocularis EmuJ_001141600 I
foxq2 Danio rerio ENSDARG00000071394 N
ENSLACG00000010819 Latimeria chalumnae ENSLACG00000010819 N
ENSLOCG00000005947 Lepisosteus oculatus ENSLOCG00000005947 I
ENSONIG00000004794 Oreochromis niloticus ENSONIG00000004794 N
foxq2 Oryzias latipes ENSORLG00000004973 N
ENSPFOG00000001440 Poecilia formosa ENSPFOG00000001440 N
ENSXMAG00000012768 Xiphophorus maculatus ENSXMAG00000012768 N
estExt_fgenesh2_kg.C_80001 Branchiostoma floridae estExt_fgenesh2_kg.C_80001 I
estExt_fgenesh2_pg.C_1200108 Branchiostoma floridae estExt_fgenesh2_pg.C_1200108 I
e_gw.6.414.1 Branchiostoma floridae e_gw.6.414.1 I
fd102C Drosophila melanogaster FBgn0039937 D
GA10799 Drosophila pseudoobscura FBgn0070855 I
GF10343 Drosophila ananassae FBgn0087384 I
GG16435 Drosophila erecta FBgn0108666 I
GH24005 Drosophila grimshawi FBgn0131461 I
GI14084 Drosophila mojavensis FBgn0136838 I
GL15611 Drosophila persimilis FBgn0153215 I
GM26767 Drosophila sechellia FBgn0181620 I
GJ15974 Drosophila virilis FBgn0203160 I
GK13662 Drosophila willistoni FBgn0215670 I
GE14501 Drosophila yakuba FBgn0232105 I
GB50374 Apis mellifera GB50374 I
GPUH_0002128801 Gongylonema pulchrum GPUH_0002128801 I
HCOI02176800 Haemonchus contortus HCOI02176800 I
HDID_0000500401 Hymenolepis diminuta HDID_0000500401 I
HDID_0000955901 Hymenolepis diminuta HDID_0000955901 I
HelroG146879 Helobdella robusta HelroG146879 I
HelroG84905 Helobdella robusta HelroG84905 I
HMEL012130 Heliconius melpomene HMEL012130 I
HmN_000125600 Hymenolepis microstoma HmN_000125600 I
HmN_000572200 Hymenolepis microstoma HmN_000572200 I
HNAJ_0000218001 Hymenolepis nana HNAJ_0000218001 I
HNAJ_0001261001 Hymenolepis nana HNAJ_0001261001 I
HPBE_0001940301 Heligmosomoides bakeri HPBE_0001940301 I
HPLM_0001940801 Haemonchus placei HPLM_0001940801 I
Hsal_00505--XP_001121752.1_APIME Harpegnathos saltator Hsal_00505--XP_001121752.1_APIME I
ISCW003951 Ixodes scapularis ISCW003951 I
KGM_06490 Danaus plexippus KGM_06490 I
L596_g8980 Steinernema carpocapsae L596_g8980 I
L889_g23699 Steinernema feltiae L889_g23699 I
L892_g5229 Steinernema scapterisci L892_g5229 I
L893_g32272 Steinernema glaseri L893_g32272 I
L898_g16488 Steinernema monticolum L898_g16488 I
LCUP005975 Lucilia cuprina LCUP005975 I
LDEC001528 Leptinotarsa decemlineata LDEC001528 I
LLOJ007413 Lutzomyia longipalpis LLOJ007413 I
LotgiG79770 Lottia gigantea LotgiG79770 I
LotgiG79781 Lottia gigantea LotgiG79781 I
MCOS_0000398701 Mesocestoides corti MCOS_0000398701 N
MESCA005623 Megaselia scalaris MESCA005623 I
NBR_0000095001 Nippostrongylus brasiliensis NBR_0000095001 I
nDi.2.2.2.g05283 Dirofilaria immitis nDi.2.2.2.g05283 I
NECAME_04384 Necator americanus NECAME_04384 I
NEMVEDRAFT_v1g125256 Nematostella vectensis NEMVEDRAFT_v1g125256 I
NEMVEDRAFT_v1g39596 Nematostella vectensis NEMVEDRAFT_v1g39596 I
NEMVEDRAFT_v1g59063 Nematostella vectensis NEMVEDRAFT_v1g59063 I
nOo.2.0.1.g07936 Onchocerca ochengi nOo.2.0.1.g07936 I
NV18839 Nasonia vitripennis NV18839 I
Ocbimv22038677m.g Octopus bimaculoides Ocbimv22038677m.g I
OESDEN_02306 Oesophagostomum dentatum OESDEN_02306 I
Ogr12164 Ophisaurus gracilis Ogr12164 N
PHUM244390 Pediculus humanus PHUM244390 I
PPAI000826 Phlebotomus papatasi PPAI000826 I
Pvit_09831 Pogona vitticeps Pvit_09831 N
RPRC002475 Rhodnius prolixus RPRC002475 I
Sakowv30023329m.g Saccoglossus kowalevskii Sakowv30023329m.g I
SBAD_0000682701 Soboliphyme baturini SBAD_0000682701 I
SINV17382 Solenopsis invicta SINV17382 I
SMAR012448 Strigamia maritima SMAR012448 I
SMRZ_0001178901 Schistosoma margrebowiei SMRZ_0001178901 N
SMU15004452 Schmidtea mediterranea SMU15004452 I
SVUK_0000095001 Strongylus vulgaris SVUK_0000095001 I
TASK_0000135801 Taenia asiatica TASK_0000135801 I
TC004761 Tribolium castaneum TC004761 I
TCLT_0000158601 Thelazia callipaeda TCLT_0000158601 I
TCNE_0000717001 Toxocara canis TCNE_0000717001 I
tetur01g09690 Tetranychus urticae tetur01g09690 I
TMUE_s0045003300 Trichuris muris TMUE_s0045003300 I
TsM_000027600 Taenia solium TsM_000027600 I
TTAC_0000212301 Hydatigera taeniaeformis TTAC_0000212301 I
TTAC_0000750901 Hydatigera taeniaeformis TTAC_0000750901 I
TTRE_0000002201 Trichuris trichiura TTRE_0000002201 I
fkh-10 Caenorhabditis elegans WBGene00001442 I
WBGene00238063 Onchocerca volvulus WBGene00238063 I
WUBG_10187 Wuchereria bancrofti WUBG_10187 I
XP_002159677.1 Hydra magnipapillata XP_002159677.1 I
YQE_09099 Dendroctonus ponderosae YQE_09099 I