L898_g14252 (Steinernema monticolum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L898_g14252 T234923_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.855 0.895
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.855 0.895
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.855 0.895
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.855 0.895
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.855 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.855 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.855 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.855 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.855 0.877
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.853 0.877
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.853 0.877
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.853 0.877
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.853 0.877
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.853 0.877
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.853 0.877
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.853 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.847 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g14252.t1 Homeodomain 190 246

Links

Other Homeodomain family TFs
Other Steinernema monticolum TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013374 Aedes aegypti AAEL013374 N
AEPI009424 Anopheles epiroticus AEPI009424 N
AMAM014362 Anopheles maculatus AMAM014362 N
ANCCAN_18840 Ancylostoma caninum ANCCAN_18840 N
ANCDUO_15583 Ancylostoma duodenale ANCDUO_15583 N
BTMF_0001429901 Brugia timori BTMF_0001429901 N
BXY_1034900 Bursaphelenchus xylophilus BXY_1034900 I
BXY_1035000 Bursaphelenchus xylophilus BXY_1035000 N
CapteG78125 Capitella teleta CapteG78125 N
CLEC006296 Cimex lectularius CLEC006296 N
D917_04255 Trichinella nativa D917_04255 N
D918_00954 Trichuris suis D918_00954 N
EFV52039 Trichinella spiralis EFV52039 N
GF17143 Drosophila ananassae FBgn0094162 N
GF17175 Drosophila ananassae FBgn0094193 N
GH12158 Drosophila grimshawi FBgn0119637 N
GI10902 Drosophila mojavensis FBgn0133665 N
GJ18548 Drosophila virilis FBgn0205706 N
Hba_07323 Heterorhabditis bacteriophora Hba_07323 N
HCOI00051800 Haemonchus contortus HCOI00051800 N
HHAL001513-PA Halyomorpha halys HHAL001513-PA N
HMEL014400 Heliconius melpomene HMEL014400 N
HPBE_0000946001 Heligmosomoides bakeri HPBE_0000946001 N
ISCW018372 Ixodes scapularis ISCW018372 N
KGM_20032 Danaus plexippus KGM_20032 N
L893_g32898 Steinernema glaseri L893_g32898 N
LCUP009247 Lucilia cuprina LCUP009247 N
MCINX008008 Melitaea cinxia MCINX008008 N
MDOA010514 Musca domestica MDOA010514 N
NECAME_09957 Necator americanus NECAME_09957 N
nRc.2.0.1.g39124 Romanomermis culicivorax nRc.2.0.1.g39124 N
PTRK_0001274900 Parastrongyloides trichosuri PTRK_0001274900 N
RPRC004296 Rhodnius prolixus RPRC004296 N
SVUK_0000102101 Strongylus vulgaris SVUK_0000102101 N
TC001693 Tribolium castaneum TC001693 N
TTRE_0000574401 Trichuris trichiura TTRE_0000574401 N