TsM_001004000 (Taenia solium)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TsM_001004000 T237079_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.930
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TsM_001004000 Homeodomain 177 233

Links

Other Homeodomain family TFs
Other Taenia solium TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009617 Calypte anna Aan_R009617 I
Aan_R009930 Calypte anna Aan_R009930 I
Afo_R005569 Aptenodytes forsteri Afo_R005569 I
Afo_R014105 Aptenodytes forsteri Afo_R014105 I
Alligator_sinensis_CCG019450.1 Alligator sinensis Alligator_sinensis_CCG019450.1 I
Alligator_sinensis_CCG019475.1 Alligator sinensis Alligator_sinensis_CCG019475.1 I
Brh_R006341 Buceros rhinoceros Brh_R006341 N
Brh_R007241 Buceros rhinoceros Brh_R007241 I
Cmyd_10004276 Chelonia mydas Cmyd_10004276 I
Cmyd_10018222 Chelonia mydas Cmyd_10018222 N
HSF2 Anolis carolinensis ENSACAG00000001260 I
ENSACAG00000003529 Anolis carolinensis ENSACAG00000003529 I
ENSAMEG00000007373 Ailuropoda melanoleuca ENSAMEG00000007373 I
ENSAMXG00000017965 Astyanax mexicanus ENSAMXG00000017965 I
ENSAPLG00000014710 Anas platyrhynchos ENSAPLG00000014710 I
HSF2 Bos taurus ENSBTAG00000012946 I
ENSCHOG00000010951 Choloepus hoffmanni ENSCHOG00000010951 I
HSF2 Callithrix jacchus ENSCJAG00000003956 I
HSF2 Cavia porcellus ENSCPOG00000007509 I
ENSCSAG00000005351 Chlorocebus sabaeus ENSCSAG00000005351 I
ENSCSAG00000016240 Chlorocebus sabaeus ENSCSAG00000016240 I
hsf2 Danio rerio ENSDARG00000053097 D
HSF2 Dasypus novemcinctus ENSDNOG00000031260 I
ENSDNOG00000048985 Dasypus novemcinctus ENSDNOG00000048985 I
Hsf2 Dipodomys ordii ENSDORG00000012571 I
HSF2 Equus caballus ENSECAG00000012553 I
HSF2 Erinaceus europaeus ENSEEUG00000000435 I
HSF2 Echinops telfairi ENSETEG00000006154 I
ENSFALG00000004260 Ficedula albicollis ENSFALG00000004260 I
ENSFALG00000011294 Ficedula albicollis ENSFALG00000011294 I
ENSFCAG00000025714 Felis catus ENSFCAG00000025714 I
HSF2 Homo sapiens ENSG00000025156 D
hsf2 Gasterosteus aculeatus ENSGACG00000004065 I
ENSGALG00000004644 Gallus gallus ENSGALG00000004644 I
ENSGALG00000014870 Gallus gallus ENSGALG00000014870 I
HSF2 Gorilla gorilla ENSGGOG00000023192 I
ENSLACG00000002436 Latimeria chalumnae ENSLACG00000002436 I
ENSLACG00000022562 Latimeria chalumnae ENSLACG00000022562 I
HSF2 Loxodonta africana ENSLAFG00000006440 I
ENSLOCG00000014654 Lepisosteus oculatus ENSLOCG00000014654 I
ENSLOCG00000017255 Lepisosteus oculatus ENSLOCG00000017255 I
ENSMGAG00000000814 Meleagris gallopavo ENSMGAG00000000814 I
HSF2 Meleagris gallopavo ENSMGAG00000013320 I
ENSMICG00000006415 Microcebus murinus ENSMICG00000006415 I
HSF2 Myotis lucifugus ENSMLUG00000002355 I
HSF2 Macaca mulatta ENSMMUG00000007910 I
HSF2 Monodelphis domestica ENSMODG00000017753 I
ENSMODG00000027338 Monodelphis domestica ENSMODG00000027338 I
ENSMPUG00000014453 Mustela putorius furo ENSMPUG00000014453 I
Hsf2 Mus musculus ENSMUSG00000019878 D
ENSNLEG00000013721 Nomascus leucogenys ENSNLEG00000013721 I
ENSOANG00000008146 Ornithorhynchus anatinus ENSOANG00000008146 I
HSF2 Ornithorhynchus anatinus ENSOANG00000014662 I
ENSOARG00000008274 Ovis aries ENSOARG00000008274 I
ENSOCUG00000022713 Oryctolagus cuniculus ENSOCUG00000022713 I
HSF2 Oryctolagus cuniculus ENSOCUG00000025991 I
HSF2 Otolemur garnettii ENSOGAG00000015721 I
ENSONIG00000001677 Oreochromis niloticus ENSONIG00000001677 I
hsf2 Oryzias latipes ENSORLG00000015498 I
ENSP00000357440-D1 Bos grunniens ENSP00000357440-D1 I
ENSPANG00000022516 Papio anubis ENSPANG00000022516 I
HSF2 Procavia capensis ENSPCAG00000016109 I
ENSPPYG00000016976 Pongo abelii ENSPPYG00000016976 I
ENSPSIG00000012313 Pelodiscus sinensis ENSPSIG00000012313 N
ENSPSIG00000014566 Pelodiscus sinensis ENSPSIG00000014566 I
HSF2 Pan troglodytes ENSPTRG00000018561 I
Hsf2 Rattus norvegicus ENSRNOG00000000808 I
ENSSHAG00000005636 Sarcophilus harrisii ENSSHAG00000005636 I
ENSSHAG00000013467 Sarcophilus harrisii ENSSHAG00000013467 I
HSF2 Sus scrofa ENSSSCG00000004238 I
ENSSTOG00000021693 Ictidomys tridecemlineatus ENSSTOG00000021693 I
ENSTBEG00000013569 Tupaia belangeri ENSTBEG00000013569 I
ENSTGUG00000002805 Taeniopygia guttata ENSTGUG00000002805 I
HSF2 Taeniopygia guttata ENSTGUG00000011838 I
ENSTSYG00000005378 Tarsius syrichta ENSTSYG00000005378 I
HSF2 Tursiops truncatus ENSTTRG00000000247 I
HSF2 Vicugna pacos ENSVPAG00000009387 I
Gfo_R015522 Geospiza fortis Gfo_R015522 I
Gfo_R016174 Geospiza fortis Gfo_R016174 I
Myotis_brandtii_HSF2_10035618 Myotis brandtii Myotis_brandtii_HSF2_10035618 I
Ogr00694 Ophisaurus gracilis Ogr00694 I
Ogr08326 Ophisaurus gracilis Ogr08326 N
Pvit_13286 Pogona vitticeps Pvit_13286 I
Tal_R003171 Tyto alba Tal_R003171 I
Tal_R013611 Tyto alba Tal_R013611 I
hsf3 Xenopus tropicalis XB-GENE-1021762 I
hsf2.L Xenopus laevis XB-GENE-954983 I
XP_002937261 Xenopus tropicalis XP_002937261 I
XP_002937262 Xenopus tropicalis XP_002937262 I
XP_002937263 Xenopus tropicalis XP_002937263 I