gene13904-v1.0-hybrid (Fragaria vesca)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 gene13904-v1.0-hybrid T243159_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.529 0.874
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.529 0.874
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.504 0.759
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.503 0.851
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.503 0.851
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.493 0.770
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.493 0.770
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.478 0.759
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.443 0.690
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.443 0.690
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.434 0.667
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.434 0.667
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.429 0.701
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.429 0.701
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.422 0.713
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.422 0.713
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.422 0.713
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.397 0.644
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.397 0.644
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13904.1-v1.0-hybrid HSF 39 129

Links

Other HSF family TFs
Other Fragaria vesca TFs

1502 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010039 Calypte anna Aan_R010039 I
Afo_R012751 Aptenodytes forsteri Afo_R012751 I
Alligator_sinensis_CCG007789.1 Alligator sinensis Alligator_sinensis_CCG007789.1 I
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I
DICVIV_13476 Dictyocaulus viviparus DICVIV_13476 I
ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I
ENSAMEG00000009347 Ailuropoda melanoleuca ENSAMEG00000009347 I
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I
ENSBTAG00000035623 Bos taurus ENSBTAG00000035623 I
ENSBTAG00000036115 Bos taurus ENSBTAG00000036115 I
ENSBTAG00000045938 Bos taurus ENSBTAG00000045938 I
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I
ENSBTAG00000047168 Bos taurus ENSBTAG00000047168 I
ENSCAFG00000023024 Canis familiaris ENSCAFG00000023024 I
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I
ENSCAFG00000025411 Canis familiaris ENSCAFG00000025411 I
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I
ENSCAFG00000031919 Canis familiaris ENSCAFG00000031919 I
ENSCJAG00000004097 Callithrix jacchus ENSCJAG00000004097 I
HSF5 Cavia porcellus ENSCPOG00000003431 I
ENSCPOG00000021607 Cavia porcellus ENSCPOG00000021607 I
ENSCSAG00000007182 Chlorocebus sabaeus ENSCSAG00000007182 I
ENSDNOG00000015218 Dasypus novemcinctus ENSDNOG00000015218 I
ENSDNOG00000043873 Dasypus novemcinctus ENSDNOG00000043873 I
ENSDNOG00000045058 Dasypus novemcinctus ENSDNOG00000045058 I
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I
ENSFALG00000008921 Ficedula albicollis ENSFALG00000008921 I
ENSFCAG00000025614 Felis catus ENSFCAG00000025614 I
HSFY2 Homo sapiens ENSG00000169953 D
HSFX1 Homo sapiens ENSG00000171116 I
HSFY1 Homo sapiens ENSG00000172468 D
HSFX2 Homo sapiens ENSG00000268738 I
ENSGALG00000019262 Gallus gallus ENSGALG00000019262 I
ENSGALG00000027212 Gallus gallus ENSGALG00000027212 I
ENSGGOG00000022734 Gorilla gorilla ENSGGOG00000022734 I
ENSGGOG00000024390 Gorilla gorilla ENSGGOG00000024390 I
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I
ENSLAFG00000010861 Loxodonta africana ENSLAFG00000010861 I
ENSLAFG00000016976 Loxodonta africana ENSLAFG00000016976 I
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I
ENSMGAG00000013753 Meleagris gallopavo ENSMGAG00000013753 I
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I
ENSMLUG00000022730 Myotis lucifugus ENSMLUG00000022730 I
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I
ENSMMUG00000002887 Macaca mulatta ENSMMUG00000002887 I
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I
Hsfy2 Mus musculus ENSMUSG00000045336 I
ENSNLEG00000013483 Nomascus leucogenys ENSNLEG00000013483 I
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I
ENSOANG00000012192 Ornithorhynchus anatinus ENSOANG00000012192 I
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I
ENSOGAG00000026441 Otolemur garnettii ENSOGAG00000026441 I
ENSP00000359444 Macaca fascicularis ENSP00000359444 I
ENSPANG00000004032 Papio anubis ENSPANG00000004032 I
ENSPFOG00000024243 Poecilia formosa ENSPFOG00000024243 I
ENSPPYG00000020808 Pongo abelii ENSPPYG00000020808 I
ENSPTRG00000028817 Pan troglodytes ENSPTRG00000028817 I
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I
ENSSSCG00000012734 Sus scrofa ENSSSCG00000012734 I
ENSTGUG00000006065 Taeniopygia guttata ENSTGUG00000006065 I
ENSTGUG00000006066 Taeniopygia guttata ENSTGUG00000006066 I
ENSVPAG00000003263 Vicugna pacos ENSVPAG00000003263 I
ENSVPAG00000003548 Vicugna pacos ENSVPAG00000003548 I
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I
ENSVPAG00000004668 Vicugna pacos ENSVPAG00000004668 I
ENSVPAG00000004671 Vicugna pacos ENSVPAG00000004671 I
ENSVPAG00000005620 Vicugna pacos ENSVPAG00000005620 I
ENSVPAG00000006426 Vicugna pacos ENSVPAG00000006426 I
ENSVPAG00000007875 Vicugna pacos ENSVPAG00000007875 I
ENSVPAG00000007931 Vicugna pacos ENSVPAG00000007931 I
ENSVPAG00000010189 Vicugna pacos ENSVPAG00000010189 I
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I
Gfo_R015011 Geospiza fortis Gfo_R015011 I
Gfo_R015012 Geospiza fortis Gfo_R015012 I
Myotis_brandtii_HSFY1_10020625 Myotis brandtii Myotis_brandtii_HSFY1_10020625 I
Ogr08578 Ophisaurus gracilis Ogr08578 I
Pvit_14501 Pogona vitticeps Pvit_14501 I
Tal_R003042 Tyto alba Tal_R003042 I
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I
V565_116890 Rhizoctonia solani V565_116890 I