CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG007789.1
(
Alligator sinensis
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
Alligator_sinensis_CCG007789.1
T242541_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFY2
M03326_2.00
Homo sapiens
WTCGAWNVRWTCGAW
WTCGAWYBNWTCGAW
SELEX
Jolma et al.(2013)
HSFY2_1
0.349
0.394
HSFY2
M03327_2.00
Homo sapiens
CRTTCGAWW
WWTCGAAYG
SELEX
Jolma et al.(2013)
HSFY2_2
0.349
0.394
HSFY2
M03328_2.00
Homo sapiens
DTCGAAHSNWTCGAW
WTCGAWNSDTTCGAH
SELEX
Jolma et al.(2013)
HSFY2_3
0.349
0.394
HSFY1
M05515_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_1
0.349
0.394
HSFY1
M05516_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_2
0.349
0.394
HSFY2
M05511_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_1
0.349
0.394
HSFY2
M05512_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_2
0.349
0.394
HSFY1
M05517_2.00
Homo sapiens
NDTRGAATGTTTRGAATGB
VCATTCYAAACATTCYAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_1
0.349
0.394
HSFY1
M05518_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_2
0.349
0.394
HSFY2
M05513_2.00
Homo sapiens
NDWRGAAYGTTTRGAAYGB
VCRTTCYAAACRTTCYWHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_1
0.349
0.394
HSFY2
M05514_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_2
0.349
0.394
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG007789.1
HSF
82
197
FPNKLWKIVESDQFKSIWWDHGGNCVVIDEELFKKEVLERRGPLRIFETDCMKSFIRQLNLYGFSKMRQDFQRSASLAEFLAEEKAASAFSKLQFYHNPNFKRGFPNLLVRCKRRV
Alligator_sinensis_CCG007789.1
HSF
300
391
FPTKLRRIVESDEVKSIIWNDNGDRIVIDEACFQRQILNRTGVLEIFETNSTKSFIRPLYLCGFSKIHKDITCHHSQAEKNRARGRILDSED
Links
Other
HSF
family TFs
Other
Alligator sinensis
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cmyd_10018130
Chelonia mydas
Cmyd_10018130
I
0.381
HSFY1
Homo sapiens
ENSG00000172468
D
0.349
HSFY2
Homo sapiens
ENSG00000169953
D
0.349
ENSMLUG00000024907
Myotis lucifugus
ENSMLUG00000024907
I
0.346
Hsfy2
Rattus norvegicus
ENSRNOG00000038569
I
0.343
Hsfy2
Mus musculus
ENSMUSG00000045336
I
0.343
ENSMLUG00000015387
Myotis lucifugus
ENSMLUG00000015387
I
0.341
ENSOANG00000001091
Ornithorhynchus anatinus
ENSOANG00000001091
I
0.337
ENSLACG00000012431
Latimeria chalumnae
ENSLACG00000012431
I
0.336
ENSECAG00000000093
Equus caballus
ENSECAG00000000093
I
0.334
Pvit_14501
Pogona vitticeps
Pvit_14501
I
0.333
ENSOANG00000028803
Ornithorhynchus anatinus
ENSOANG00000028803
I
0.331
Afo_R012751
Aptenodytes forsteri
Afo_R012751
I
0.330
ENSBTAG00000046306
Bos taurus
ENSBTAG00000046306
I
0.329
Ogr08578
Ophisaurus gracilis
Ogr08578
I
0.328
ENSMODG00000027398
Monodelphis domestica
ENSMODG00000027398
I
0.327
ENSOANG00000012192
Ornithorhynchus anatinus
ENSOANG00000012192
I
0.325
ENSCSAG00000018308
Chlorocebus sabaeus
ENSCSAG00000018308
I
0.324
ENSMEUG00000003908
Macropus eugenii
ENSMEUG00000003908
I
0.323
ENSLOCG00000014483
Lepisosteus oculatus
ENSLOCG00000014483
I
0.321
ENSACAG00000008631
Anolis carolinensis
ENSACAG00000008631
I
0.320