CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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IRF3
(
Loxodonta africana
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00605 (IRF)
IPR001346
ENSLAFG00000028074
T244145_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IRF3
M03331_2.00
Homo sapiens
NNRRAANGGAAACCGAAACYR
YRGTTTCGGTTTCCNTTYYNN
SELEX
Jolma et al.(2013)
IRF3_1
0.737
0.737
IRF3
M05531_2.00
Homo sapiens
DCVGTTTCSNSGAAACCGMAASN
NSTTKCGGTTTCSNSGAAACBGH
SELEX
Yin et al.(2017)
IRF3_eDBD_HT-SELEX
0.737
0.737
IRF3
M05533_2.00
Homo sapiens
HSGAAAVBGAAACYGAAACN
NGTTTCRGTTTCVBTTTCSD
SELEX
Yin et al.(2017)
IRF3_FL_HT-SELEX
0.737
0.737
IRF3
M09234_2.00
Homo sapiens
RRRARDGAAAVDGRAASNRA
TYNSTTYCHBTTTCHYTYYY
Misc
Kulakovskiy et al.(2013)
IRF3_HUMAN.H11MO.0.B
0.737
0.737
IRF3
M10883_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF3_Q3
0.737
0.737
IRF3
M05532_2.00
Homo sapiens
KCDSTTTCCHGGAAAMNRAWAV
BTWTYNKTTTCCDGGAAASHGM
SELEX
Yin et al.(2017)
IRF3_eDBD_Methyl-HT-SELEX
0.737
0.737
IRF3
M05534_2.00
Homo sapiens
HGGAAABBGAAASBGAAASN
NSTTTCVSTTTCVVTTTCCD
SELEX
Yin et al.(2017)
IRF3_FL_Methyl-HT-SELEX
0.737
0.737
Irf3
M00174_2.00
Mus musculus
RDWNBGMAAS
STTKCVNWHY
PBM
Badis et al.(2009)
Irf3_3985
0.702
0.702
Irf3
M09241_2.00
Mus musculus
RRRARDGAAAVDGRAASNRA
TYNSTTYCHBTTTCHYTYYY
Misc
Kulakovskiy et al.(2013)
IRF3_MOUSE.H11MO.0.A
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000023565
IRF
7
63
RILPWLISLLDRGQLEGVAWVDANRTRFRIPWKHRLRQDTQQEDFRIFQAWSWPECV
Links
Other
IRF
family TFs
Other
Loxodonta africana
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL26
Arabidopsis thaliana
AT4G08250
N
Bo9g120770
Brassica oleracea
Bo9g120770
N
Bostr.3877s0035
Boechera stricta
Bostr.3877s0035
N
Cagra.0196s0006
Capsella grandiflora
Cagra.0196s0006
N
Carubv10003692m.g
Capsella rubella
Carubv10003692m.g
N
scaffold_603155.1
Arabidopsis lyrata
scaffold_603155.1
N
Thhalv10028622m.g
Eutrema salsugineum
Thhalv10028622m.g
N