Bra030647 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra030647 T245073_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD2
M06953_2.00 		Arabidopsis thaliana
SCGANRAWDNCGGHR
YDCCGNHWTYNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_col_a 		0.959 0.959
LBD2
M06954_2.00 		Arabidopsis thaliana
SCGANAAWNTCGGDN
NHCCGANWTTNTCGS		 Dap-seq
OMalley et al.(2016)
LBD2_colamp_a 		0.959 0.959
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030647.1-P LOB 20 116

Links

Other LOB family TFs
Other Brassica rapa TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD2 Arabidopsis thaliana AT1G06280 D 0.959
Bo8g006050 Brassica oleracea Bo8g006050 I 0.969
Bo8g114670 Brassica oleracea Bo8g114670 I 0.969
Bostr.25219s0329 Boechera stricta Bostr.25219s0329 I 0.959
Bra032430 Brassica rapa Bra032430 I 0.907
Cagra.1671s0259 Capsella grandiflora Cagra.1671s0259 I 0.959
Carubv10011711m.g Capsella rubella Carubv10011711m.g I 0.959
LBD2 Arabidopsis lyrata scaffold_100624.1 I 0.959
Thhalv10008796m.g Eutrema salsugineum Thhalv10008796m.g I 0.969