Bra037323 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra037323 T245088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.970 0.970
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.970 0.970
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.818 0.818
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.818 0.818
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.727 0.727
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.727 0.727
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.727 0.727
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.717 0.717
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037323.1-P LOB 15 114

Links

Other LOB family TFs
Other Brassica rapa TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP15405 Atta cephalotes ACEP15405 I
ACOC_0001162801 Angiostrongylus costaricensis ACOC_0001162801 N
ANCCAN_04270 Ancylostoma caninum ANCCAN_04270 N
ANCCEY_06029 Ancylostoma ceylanicum ANCCEY_06029 N
ANCCEY_07283 Ancylostoma ceylanicum ANCCEY_07283 I
ANCDUO_02717 Ancylostoma duodenale ANCDUO_02717 N
D915_00208 Fasciola hepatica D915_00208 I
D917_08051 Trichinella nativa D917_08051 I
DICVIV_06588 Dictyocaulus viviparus DICVIV_06588 N
ECPE_0000534101 Echinostoma caproni ECPE_0000534101 I
tfap2b Danio rerio ENSDARG00000012667 I
ENSETEG00000009017 Echinops telfairi ENSETEG00000009017 I
TFAP2A Homo sapiens ENSG00000137203 D
ENSGACG00000002672 Gasterosteus aculeatus ENSGACG00000002672 I
ENSGMOG00000009513 Gadus morhua ENSGMOG00000009513 I
ENSMEUG00000007703 Macropus eugenii ENSMEUG00000007703 I
TFAP2D Microcebus murinus ENSMICG00000005507 I
ENSPCAG00000015999 Procavia capensis ENSPCAG00000015999 I
ENSSARG00000001996 Sorex araneus ENSSARG00000001996 I
GPLIN_001548200 Globodera pallida GPLIN_001548200 I
Hba_07416 Heterorhabditis bacteriophora Hba_07416 I
HCOI00642600 Haemonchus contortus HCOI00642600 N
HPLM_0001885301 Haemonchus placei HPLM_0001885301 N
MCINX002204 Melitaea cinxia MCINX002204 I
nAv.1.0.1.g06665 Acanthocheilonema viteae nAv.1.0.1.g06665 I
NBR_0000790901 Nippostrongylus brasiliensis NBR_0000790901 N
NECAME_07951 Necator americanus NECAME_07951 N
nOo.2.0.1.g09186 Onchocerca ochengi nOo.2.0.1.g09186 I
OESDEN_04966 Oesophagostomum dentatum OESDEN_04966 N
OFLC_0000811001 Onchocerca flexuosa OFLC_0000811001 I
PEQ_0000626601 Parascaris equorum PEQ_0000626601 I
PPA19579 Pristionchus pacificus PPA19579 I
Sakowv30010957m.g Saccoglossus kowalevskii Sakowv30010957m.g I
Sjc_0121700 Schistosoma japonicum Sjc_0121700 I
snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 I
SPER_0000909201 Spirometra erinaceieuropaei SPER_0000909201 I
SVUK_0000972601 Strongylus vulgaris SVUK_0000972601 N
TELCIR_13120 Teladorsagia circumcincta TELCIR_13120 N
TELCIR_24906 Teladorsagia circumcincta TELCIR_24906 I