LBD19 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT2G45410 T244883_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00		 Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a		 (Direct) (Direct)
LBD19
M06961_2.00		 Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.747 0.747
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.747 0.747
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.707 0.707
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G45410.1 LOB 16 115

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.990
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.980
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.980
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.960
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.919
Bo4g024610 Brassica oleracea Bo4g024610 I 0.909
Bra004908 Brassica rapa Bra004908 I 0.899
Bra040312 Brassica rapa Bra040312 I 0.899
Bo4g195510 Brassica oleracea Bo4g195510 I 0.876
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.852
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.848
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.838
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.838
Pm017935 Prunus mume Pm017935 I 0.838
MDP0000429067 Malus domestica MDP0000429067 I 0.838
PK25573.1 Cannabis sativa PK25573.1 I 0.838
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.828
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.828
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.828
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.828
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.828
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.828
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.828
30174.m008897 Ricinus communis 30174.m008897 I 0.818
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.818
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.818
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.808
mgf020735m Mimulus guttatus mgf020735m I 0.808
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.808
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.808
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.808
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.808
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.802
Ca_19598 Cicer arietinum Ca_19598 I 0.798
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.791
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.788
Cla007069 Citrullus lanatus Cla007069 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.788
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.788
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.780
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.779
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.778
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.778
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.778
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.778
30174.m008898 Ricinus communis 30174.m008898 I 0.778
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.778
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.778
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.778
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.777
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.769
LBD31 Arabidopsis thaliana AT4G00210 I 0.768
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.768
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.768
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.768
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.768
OBART03G10450 Oryza barthii OBART03G10450 I 0.768
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.768
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.768
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.768
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.768
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.768
OS03G0246900 Oryza sativa OS03G0246900 I 0.768
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.768
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
Pm017936 Prunus mume Pm017936 I 0.768
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.768
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.768
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.768
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.767
Bo4g195520 Brassica oleracea Bo4g195520 I 0.758
Bra040311 Brassica rapa Bra040311 I 0.758
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.758
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.758
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.758
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.758
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.753
MDP0000254224 Malus domestica MDP0000254224 I 0.750
LBD18 Arabidopsis thaliana AT2G45420 D 0.747
Bo4g024620 Brassica oleracea Bo4g024620 I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.747
OB10G12360 Oryza brachyantha OB10G12360 I 0.747
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.747
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.747
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.747
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.747
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.747
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.742
Ca_20429 Cicer arietinum Ca_20429 I 0.742
TCM_005496 Theobroma cacao TCM_005496 I 0.739
Bo9g002150 Brassica oleracea Bo9g002150 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
Bra037322 Brassica rapa Bra037322 I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.737
OB03G20590 Oryza brachyantha OB03G20590 I 0.736
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.734
PK23185.1 Cannabis sativa PK23185.1 I 0.730
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.727
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.727
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.727
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.727
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.727
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.727
OS10G0162600 Oryza sativa OS10G0162600 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
Cla002965 Citrullus lanatus Cla002965 I 0.717
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.717
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.713
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.707
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
TCM_004106 Theobroma cacao TCM_004106 I 0.707
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.707
Bra001087 Brassica rapa Bra001087 I 0.706