Bra001087 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra001087 T245031_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.838 0.838
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.838 0.838
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.794 0.794
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.794 0.794
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.794 0.794
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.794 0.794
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.794 0.794
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.706 0.706
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001087.1-P LOB 52 120

Links

Other LOB family TFs
Other Brassica rapa TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD20 Arabidopsis thaliana AT3G03760 I 0.971
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.971
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.971
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.971
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.971
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.926
Pm028642 Prunus mume Pm028642 I 0.926
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.882
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.868
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.838
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.838
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.838
OB03G20590 Oryza brachyantha OB03G20590 I 0.824
OB10G12360 Oryza brachyantha OB10G12360 I 0.824
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.824
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.824
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.824
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.809
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.809
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.809
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.809
LBD16 Arabidopsis thaliana AT2G42430 D 0.794
LBD30 Arabidopsis thaliana AT4G00220 D 0.794
Bra016877 Brassica rapa Bra016877 I 0.794
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.794
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.794
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.794
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.794
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.794
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.794
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.794
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.794
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.794
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.794
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.779
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.779
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.779
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.779
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.779
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.779
PK23380.1 Cannabis sativa PK23380.1 I 0.776
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.765
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.765
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.765
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.750
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.750
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.750
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.750
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.750
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.750
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.750
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.750
OS02G0820500 Oryza sativa OS02G0820500 I 0.750
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.750
mgf020773m Mimulus guttatus mgf020773m I 0.750
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.750
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.750
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.750
MDP0000429067 Malus domestica MDP0000429067 I 0.750
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.750
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.735
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.735
Si019578m.g Setaria italica Si019578m.g I 0.735
Cla021625 Citrullus lanatus Cla021625 I 0.735
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.735
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.735
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.735
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.735
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.735
PK25573.1 Cannabis sativa PK25573.1 I 0.735
Bo4g024610 Brassica oleracea Bo4g024610 I 0.721
F775_22967 Aegilops tauschii F775_22967 I 0.721
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.721
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.721
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.721
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.721
Si015156m.g Setaria italica Si015156m.g I 0.721
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.721
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.721
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.721
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.721
LBD19 Arabidopsis thaliana AT2G45410 D 0.706
Bo8g092560 Brassica oleracea Bo8g092560 I 0.706
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.706
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.706
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.706
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.706
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.706
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.706
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.706
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.706
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.706
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.706
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.706
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.706