GSMUA_Achr9G10530_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr9G10530_001 T245365_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.727 0.727
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.727 0.727
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.707 0.707
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr9P10530_001 LOB 781 880

Links

Other LOB family TFs
Other Musa acuminata TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD20 Arabidopsis thaliana AT3G03760 I 0.818
Bo1g153580 Brassica oleracea Bo1g153580 I 0.818
Bra036436 Brassica rapa Bra036436 I 0.818
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.818
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.818
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.818
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.818
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.818
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.808
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.808
Pm028642 Prunus mume Pm028642 I 0.808
TCM_025849 Theobroma cacao TCM_025849 I 0.798
30072.m000955 Ricinus communis 30072.m000955 I 0.798
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.798
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.798
mgf006429m Mimulus guttatus mgf006429m I 0.798
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.798
MDP0000322059 Malus domestica MDP0000322059 I 0.798
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.798
Bra001087 Brassica rapa Bra001087 I 0.794
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.788
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.788
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.788
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.788
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.788
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.778
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.778
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.775
Cla002965 Citrullus lanatus Cla002965 I 0.768
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.768
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.758
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.758
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.758
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
MDP0000254224 Malus domestica MDP0000254224 I 0.750
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.747
30174.m008898 Ricinus communis 30174.m008898 I 0.747
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.747
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.747
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.739
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.737
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.737
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.737
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.737
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.737
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.737
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.737
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.737
Ca_12213 Cicer arietinum Ca_12213 I 0.737
Ca_19716 Cicer arietinum Ca_19716 I 0.737
Cla007068 Citrullus lanatus Cla007068 I 0.737
Pm017936 Prunus mume Pm017936 I 0.737
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.737
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.737
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.737
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.737
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.736
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.736
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.733
LBD18 Arabidopsis thaliana AT2G45420 D 0.727
Bo4g024620 Brassica oleracea Bo4g024620 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.727
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.727
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.727
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.727
OB10G12360 Oryza brachyantha OB10G12360 I 0.727
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.727
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.727
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.727
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.727
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.727
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.727
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.727
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.717
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.717
Pm020629 Prunus mume Pm020629 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
BGIOSGA000736 Oryza indica BGIOSGA000736 N 0.707
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.707
Bo4g191530 Brassica oleracea Bo4g191530 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.707
BRADI2G51310 Brachypodium distachyon BRADI2G51310 N 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
LPERR01G28060 Leersia perrieri LPERR01G28060 N 0.707
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
OB02G44330 Oryza brachyantha OB02G44330 I 0.707
OBART01G32570 Oryza barthii OBART01G32570 N 0.707
OGLUM01G36730 Oryza glumaepatula OGLUM01G36730 N 0.707
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.707
OMERI01G29510 Oryza meridionalis OMERI01G29510 N 0.707
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.707
ONIVA01G36850 Oryza nivara ONIVA01G36850 N 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.707
ORGLA07G0240800 Oryza glaberrima ORGLA07G0240800 N 0.707
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.707
OS02G0820500 Oryza sativa OS02G0820500 I 0.707
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
Sb03g035920 Sorghum bicolor Sb03g035920 N 0.707
Si004290m.g Setaria italica Si004290m.g N 0.707
Si019578m.g Setaria italica Si019578m.g I 0.707
Pm017935 Prunus mume Pm017935 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.707
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.707