gw1.190.59.1 (Physcomitrella patens)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gw1.190.59.1 T246556_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.807 0.807
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.807 0.807
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.750 0.750
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.750 0.750
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.750 0.750
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.750 0.750
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.190.59.1 LOB 3 91

Links

Other LOB family TFs
Other Physcomitrella patens TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.909
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.897
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.875
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.839
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.839
LBD20 Arabidopsis thaliana AT3G03760 I 0.830
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.830
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.830
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.830
30174.m008898 Ricinus communis 30174.m008898 I 0.830
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.830
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.830
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.830
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.830
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.830
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.830
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.830
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.830
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.830
MDP0000254224 Malus domestica MDP0000254224 I 0.830
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.830
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.830
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.828
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.828
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.818
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.818
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.818
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.818
OBART03G10450 Oryza barthii OBART03G10450 I 0.818
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.818
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.818
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.818
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.818
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.818
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.818
OS03G0246900 Oryza sativa OS03G0246900 I 0.818
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.818
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.818
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.818
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.818
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.818
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.818
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.807
Bra040311 Brassica rapa Bra040311 I 0.807
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.807
OB03G20590 Oryza brachyantha OB03G20590 I 0.807
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.807
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.807
TCM_025849 Theobroma cacao TCM_025849 I 0.807
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.807
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.807
Ca_19716 Cicer arietinum Ca_19716 I 0.807
Cla002965 Citrullus lanatus Cla002965 I 0.807
Pm028642 Prunus mume Pm028642 I 0.807
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.807
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.807
Bo4g024620 Brassica oleracea Bo4g024620 I 0.795
Bo4g195520 Brassica oleracea Bo4g195520 I 0.795
Bra004910 Brassica rapa Bra004910 I 0.795
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.795
OB10G12360 Oryza brachyantha OB10G12360 I 0.795
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.795
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.784
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.784
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.784
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.784
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.784
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.784
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.784
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.784
TCM_005496 Theobroma cacao TCM_005496 I 0.783
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.773
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.773
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.773
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.773
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.773
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.773
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.773
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.761
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.761
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.761
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.761
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.761
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.761
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.761
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.761
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.761
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.761
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.761
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.761
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.761
mgf020773m Mimulus guttatus mgf020773m I 0.761
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.761
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.761
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.761
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.761
LBD16 Arabidopsis thaliana AT2G42430 D 0.750
LBD30 Arabidopsis thaliana AT4G00220 D 0.750
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.750
Bo4g016000 Brassica oleracea Bo4g016000 I 0.750
Bo4g191530 Brassica oleracea Bo4g191530 I 0.750
Bra004693 Brassica rapa Bra004693 I 0.750
F775_02052 Aegilops tauschii F775_02052 I 0.750
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.750
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.750
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.750
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.750
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.750
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.750
OB02G44330 Oryza brachyantha OB02G44330 I 0.750
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.750
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.750
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.750
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.750
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.750
OS02G0820500 Oryza sativa OS02G0820500 I 0.750
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.750
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.750
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.750
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.750
Si019578m.g Setaria italica Si019578m.g I 0.750
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.750
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.750
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.750
Pm020627 Prunus mume Pm020627 I 0.750
Pm020628 Prunus mume Pm020628 I 0.750
Pm020629 Prunus mume Pm020629 I 0.750
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.750
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.750
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.750
Aquca_009_00958 Aquilegia coerulea Aquca_009_00958 I 0.750
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.750
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.750
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.750
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.750
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.750
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.750
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.750
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.750
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.750
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.750
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.750
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.750
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.750
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.750
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.750
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.750
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.750
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.747
Bo3g036030 Brassica oleracea Bo3g036030 I 0.739
Bo8g092560 Brassica oleracea Bo8g092560 I 0.739
Bra000257 Brassica rapa Bra000257 I 0.739
Bra016877 Brassica rapa Bra016877 I 0.739
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.739
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.739
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.739
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.739
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.739
29883.m002035 Ricinus communis 29883.m002035 I 0.739
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.739
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.739
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.739
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.739
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.739
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.739
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.739
MDP0000145761 Malus domestica MDP0000145761 I 0.739
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.739
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.739
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.739
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.739
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.739
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.739
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.737
Cla007068 Citrullus lanatus Cla007068 I 0.737
Pm017936 Prunus mume Pm017936 I 0.737
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.737
mgf006429m Mimulus guttatus mgf006429m I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.727
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.727
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.727
Si015156m.g Setaria italica Si015156m.g I 0.727
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
Cla021625 Citrullus lanatus Cla021625 I 0.727
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.727
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.727
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.727
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.727
MDP0000429067 Malus domestica MDP0000429067 I 0.727
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.727
PK25573.1 Cannabis sativa PK25573.1 I 0.727
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.727
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.719
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.719
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
30072.m000955 Ricinus communis 30072.m000955 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.717
MDP0000322059 Malus domestica MDP0000322059 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.716
Bra037322 Brassica rapa Bra037322 I 0.716
F775_22967 Aegilops tauschii F775_22967 I 0.716
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.716
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.716
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.716
OB08G30680 Oryza brachyantha OB08G30680 I 0.716
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.716
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.716
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.716
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.716
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.716
Ca_20429 Cicer arietinum Ca_20429 I 0.716
Pm017935 Prunus mume Pm017935 I 0.716
30174.m008897 Ricinus communis 30174.m008897 I 0.716
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.716
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.716
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.716
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.716
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.716
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.716
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.716
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.707
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.705
LBD31 Arabidopsis thaliana AT4G00210 I 0.705
Bo4g108600 Brassica oleracea Bo4g108600 I 0.705
Bra007385 Brassica rapa Bra007385 N 0.705
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.705
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.705
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.705
OBART03G03820 Oryza barthii OBART03G03820 I 0.705
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.705
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.705
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.705
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.705
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.705
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.705
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.705
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.705
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.705
MDP0000123797 Malus domestica MDP0000123797 N 0.705
PK23185.1 Cannabis sativa PK23185.1 I 0.705