Thhalv10006226m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10006226m.g T247335_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.747 0.747
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.747 0.747
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006226m LOB 11 110

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g092560 Brassica oleracea Bo8g092560 I 0.990
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.980
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.980
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.980
LBD29 Arabidopsis thaliana AT3G58190 I 0.970
Bo4g108600 Brassica oleracea Bo4g108600 I 0.960
Bra014581 Brassica rapa Bra014581 I 0.960
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.960
Bra007385 Brassica rapa Bra007385 N 0.949
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.909
Bo4g191540 Brassica oleracea Bo4g191540 N 0.899
Bra016876 Brassica rapa Bra016876 N 0.899
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.889
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.889
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.889
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.889
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.889
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.889
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.889
LBD17 Arabidopsis thaliana AT2G42440 N 0.879
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.879
OB08G30680 Oryza brachyantha OB08G30680 I 0.879
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.879
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.879
28428.m000040 Ricinus communis 28428.m000040 I 0.879
mgf020773m Mimulus guttatus mgf020773m I 0.879
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.879
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.879
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.869
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.869
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.869
Ca_07763 Cicer arietinum Ca_07763 I 0.869
Cla006087 Citrullus lanatus Cla006087 I 0.869
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.869
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.869
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.869
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.869
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.859
OBART08G23860 Oryza barthii OBART08G23860 I 0.859
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.859
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.859
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.859
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.859
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.859
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.859
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.859
OS08G0563400 Oryza sativa OS08G0563400 I 0.859
Si015156m.g Setaria italica Si015156m.g I 0.859
Pm020628 Prunus mume Pm020628 I 0.859
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.859
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.859
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.848
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.848
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.848
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.848
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.848
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.848
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.848
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.848
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.848
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.838
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.838
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.838
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.838
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.838
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.838
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.838
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.838
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.838
TCM_004103 Theobroma cacao TCM_004103 I 0.832
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.828
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.828
F775_02052 Aegilops tauschii F775_02052 I 0.828
F775_22967 Aegilops tauschii F775_22967 I 0.828
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.828
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.828
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.828
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.828
OB03G13890 Oryza brachyantha OB03G13890 I 0.828
OBART03G03830 Oryza barthii OBART03G03830 I 0.828
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.828
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.828
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.828
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.828
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.828
OS03G0149100 Oryza sativa OS03G0149100 I 0.828
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.828
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.828
Si040019m.g Setaria italica Si040019m.g I 0.828
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.828
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.828
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.828
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.828
Pm020627 Prunus mume Pm020627 I 0.828
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.828
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.828
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.818
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.818
Ca_12214 Cicer arietinum Ca_12214 I 0.818
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.818
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.818
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.808
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.808
Cla015094 Citrullus lanatus Cla015094 I 0.808
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.808
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.808
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.798
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.798
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.798
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.798
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.798
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.788
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.781
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.781
Bo4g016000 Brassica oleracea Bo4g016000 I 0.758
Bo4g191530 Brassica oleracea Bo4g191530 I 0.758
Bra004693 Brassica rapa Bra004693 I 0.758
Bra021737 Brassica rapa Bra021737 N 0.758
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.758
OB02G44330 Oryza brachyantha OB02G44330 I 0.758
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.758
Si019578m.g Setaria italica Si019578m.g I 0.758
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.758
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.758
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.758
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.758
LBD16 Arabidopsis thaliana AT2G42430 D 0.747
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.747
Bo4g052270 Brassica oleracea Bo4g052270 N 0.747
Bra016877 Brassica rapa Bra016877 I 0.747
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.747
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.747
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.747
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.747
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.747
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.747
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.747
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.747
OS02G0820500 Oryza sativa OS02G0820500 I 0.747
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.747
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.747
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.747
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.747
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.747
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.747
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
LBD14 Arabidopsis thaliana AT2G31310 N 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.737
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.737
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.737
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.737
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.737
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.737
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.737
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.737
Bo3g036000 Brassica oleracea Bo3g036000 I 0.731
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.730
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
Bo3g036030 Brassica oleracea Bo3g036030 I 0.727
Bra000257 Brassica rapa Bra000257 I 0.727
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.727
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.727
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.727
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.727
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.727
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.727
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.727
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
TCM_042730 Theobroma cacao TCM_042730 I 0.727
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
Ca_12213 Cicer arietinum Ca_12213 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
30174.m008898 Ricinus communis 30174.m008898 I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.727
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.727
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.717
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.717
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Si037727m.g Setaria italica Si037727m.g I 0.717
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.717
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.717
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.717
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.717
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.717
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.717
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.717
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
Aquca_003_00139 Aquilegia coerulea Aquca_003_00139 N 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.717
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.717
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.717
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.717
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.717
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.717
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.713
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.707
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.707
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.707
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.707
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.707
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.707
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.707
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
Ca_19716 Cicer arietinum Ca_19716 I 0.707
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.707
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.707
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
MDP0000429067 Malus domestica MDP0000429067 I 0.707
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.707
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.707
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.703