Cagra.6952s0010 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.6952s0010 T246744_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6952s0010.1.p LOB 7 106

Links

Other LOB family TFs
Other Capsella grandiflora TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD14 Arabidopsis thaliana AT2G31310 N 1.000
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 1.000
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.990
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.990
Bra021737 Brassica rapa Bra021737 N 0.960
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.949
Bo4g052270 Brassica oleracea Bo4g052270 N 0.939
Bra018260 Brassica rapa Bra018260 N 0.808
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.768
Ca_12214 Cicer arietinum Ca_12214 I 0.768
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.747
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.747
OB08G30680 Oryza brachyantha OB08G30680 I 0.747
mgf020773m Mimulus guttatus mgf020773m I 0.747
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.747
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.747
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.747
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.747
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.747
LBD29 Arabidopsis thaliana AT3G58190 I 0.737
Bo8g092560 Brassica oleracea Bo8g092560 I 0.737
Bra014581 Brassica rapa Bra014581 I 0.737
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.737
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.737
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.737
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.737
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.737
Cla006087 Citrullus lanatus Cla006087 I 0.737
28428.m000040 Ricinus communis 28428.m000040 I 0.737
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.737
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.737
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.737
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.737
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.737
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.737
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.737
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.737
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.737
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.727
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.727
OBART08G23860 Oryza barthii OBART08G23860 I 0.727
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.727
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.727
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.727
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.727
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.727
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.727
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.727
OS08G0563400 Oryza sativa OS08G0563400 I 0.727
Ca_07763 Cicer arietinum Ca_07763 I 0.727
Cla015094 Citrullus lanatus Cla015094 I 0.727
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.727
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.727
Bo4g108600 Brassica oleracea Bo4g108600 I 0.717
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.717
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.717
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.717
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.717
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.717
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.717
LBD17 Arabidopsis thaliana AT2G42440 N 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
Bo4g191540 Brassica oleracea Bo4g191540 N 0.707
Bra007385 Brassica rapa Bra007385 N 0.707
Bra016876 Brassica rapa Bra016876 N 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Pm020628 Prunus mume Pm020628 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.707