Cucsa.388160 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.388160 T246536_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.388160.1 LOB 11 110

Links

Other LOB family TFs
Other Cucumis sativus TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla015094 Citrullus lanatus Cla015094 I 0.980
PK23380.1 Cannabis sativa PK23380.1 I 0.881
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.869
28428.m000040 Ricinus communis 28428.m000040 I 0.869
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.869
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.869
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.859
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.859
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.859
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.859
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.859
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.859
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.859
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.848
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.848
Pm020628 Prunus mume Pm020628 I 0.848
mgf020773m Mimulus guttatus mgf020773m I 0.848
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.848
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.848
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.848
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.848
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.848
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.848
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.838
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.838
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.828
Ca_07763 Cicer arietinum Ca_07763 I 0.828
Cla006087 Citrullus lanatus Cla006087 I 0.828
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.828
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.828
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.818
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.818
Ca_12214 Cicer arietinum Ca_12214 I 0.818
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.818
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.818
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.818
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.818
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.818
TCM_004103 Theobroma cacao TCM_004103 I 0.811
LBD29 Arabidopsis thaliana AT3G58190 I 0.808
Bo8g092560 Brassica oleracea Bo8g092560 I 0.808
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.808
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.808
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.808
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.798
Bo4g108600 Brassica oleracea Bo4g108600 I 0.798
Bra014581 Brassica rapa Bra014581 I 0.798
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.798
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.798
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.798
OB03G13890 Oryza brachyantha OB03G13890 I 0.798
OB08G30680 Oryza brachyantha OB08G30680 I 0.798
OBART03G03830 Oryza barthii OBART03G03830 I 0.798
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.798
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.798
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.798
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.798
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.798
OS03G0149100 Oryza sativa OS03G0149100 I 0.798
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.798
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.798
Si040019m.g Setaria italica Si040019m.g I 0.798
Pm020627 Prunus mume Pm020627 I 0.798
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.798
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.798
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.798
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.788
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.788
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.788
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.778
Bra007385 Brassica rapa Bra007385 N 0.778
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.778
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.778
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.778
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.778
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.778
OBART08G23860 Oryza barthii OBART08G23860 I 0.778
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.778
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.778
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.778
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.778
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.778
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.778
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.778
OS08G0563400 Oryza sativa OS08G0563400 I 0.778
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.778
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.778
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.778
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.768
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.768
Si015156m.g Setaria italica Si015156m.g I 0.768
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.768
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.768
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.767
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.760
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.760
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.758
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.758
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.758
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.747
LBD17 Arabidopsis thaliana AT2G42440 N 0.747
Bo4g191540 Brassica oleracea Bo4g191540 N 0.747
Bra016876 Brassica rapa Bra016876 N 0.747
F775_22967 Aegilops tauschii F775_22967 I 0.747
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.747
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.747
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.747
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.747
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.747
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.742
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
F775_02052 Aegilops tauschii F775_02052 I 0.737
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.737
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.737
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.735
MDP0000254224 Malus domestica MDP0000254224 I 0.728
Bo4g052270 Brassica oleracea Bo4g052270 N 0.727
Bra021737 Brassica rapa Bra021737 N 0.727
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.727
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
30174.m008898 Ricinus communis 30174.m008898 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.722
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.722
Bra001087 Brassica rapa Bra001087 I 0.721
LBD14 Arabidopsis thaliana AT2G31310 N 0.717
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.717
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.717
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.717
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.717
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.717
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.717
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.717
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.717
OS02G0820500 Oryza sativa OS02G0820500 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.717
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.707
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.707
Bo4g191530 Brassica oleracea Bo4g191530 I 0.707
Bo4g195520 Brassica oleracea Bo4g195520 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.707
Bra040311 Brassica rapa Bra040311 I 0.707
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.707
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.707
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.707
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.707
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.707
OB02G44330 Oryza brachyantha OB02G44330 I 0.707
OBART03G10450 Oryza barthii OBART03G10450 I 0.707
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.707
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.707
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.707
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.707
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.707
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.707
OS03G0246900 Oryza sativa OS03G0246900 I 0.707
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.707
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.707
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.707
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.707
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.707
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.707
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.707
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.707
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.707
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.707
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.701
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.701