Pm020627 (Prunus mume)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pm020627 T246387_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.727 0.727
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.727 0.727
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm020627 LOB 7 106

Links

Other LOB family TFs
Other Prunus mume TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 1.000
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.919
28428.m000040 Ricinus communis 28428.m000040 I 0.909
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.909
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.909
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.909
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.899
Cla006087 Citrullus lanatus Cla006087 I 0.899
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.899
mgf020773m Mimulus guttatus mgf020773m I 0.899
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.899
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.899
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.889
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.889
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.889
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.889
Pm020628 Prunus mume Pm020628 I 0.889
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.889
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.889
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.889
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.889
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.879
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.879
Ca_07763 Cicer arietinum Ca_07763 I 0.879
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.879
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.879
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.879
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.859
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.859
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.859
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.859
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.859
TCM_004103 Theobroma cacao TCM_004103 I 0.853
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.848
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.848
Ca_12214 Cicer arietinum Ca_12214 I 0.848
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.848
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.848
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.848
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.838
Bo8g092560 Brassica oleracea Bo8g092560 I 0.838
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.838
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.838
OB03G13890 Oryza brachyantha OB03G13890 I 0.838
OBART03G03830 Oryza barthii OBART03G03830 I 0.838
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.838
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.838
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.838
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.838
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.838
OS03G0149100 Oryza sativa OS03G0149100 I 0.838
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.838
Si040019m.g Setaria italica Si040019m.g I 0.838
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.838
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.838
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.828
OB08G30680 Oryza brachyantha OB08G30680 I 0.828
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.828
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.828
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.828
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.828
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.828
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.828
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.828
LBD29 Arabidopsis thaliana AT3G58190 I 0.818
Bo4g108600 Brassica oleracea Bo4g108600 I 0.818
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.818
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.818
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.818
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.818
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.808
Bra007385 Brassica rapa Bra007385 N 0.808
Bra014581 Brassica rapa Bra014581 I 0.808
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.808
OBART08G23860 Oryza barthii OBART08G23860 I 0.808
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.808
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.808
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.808
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.808
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.808
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.808
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.808
OS08G0563400 Oryza sativa OS08G0563400 I 0.808
Si015156m.g Setaria italica Si015156m.g I 0.808
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.808
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.798
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.798
Cla015094 Citrullus lanatus Cla015094 I 0.798
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.798
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.792
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.792
Bra016876 Brassica rapa Bra016876 N 0.788
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.788
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.788
Bo4g191540 Brassica oleracea Bo4g191540 N 0.778
F775_02052 Aegilops tauschii F775_02052 I 0.778
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.778
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.778
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.770
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.768
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.768
F775_22967 Aegilops tauschii F775_22967 I 0.768
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.768
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.768
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.768
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.768
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.768
LBD17 Arabidopsis thaliana AT2G42440 N 0.758
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.758
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.758
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.758
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.758
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.758
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.758
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.758
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.747
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.747
Pm020629 Prunus mume Pm020629 I 0.747
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.747
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.747
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.747
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.744
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.742
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
Bra004693 Brassica rapa Bra004693 I 0.737
Bra016877 Brassica rapa Bra016877 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.737
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.737
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.737
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.737
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.737
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.737
TCM_004106 Theobroma cacao TCM_004106 I 0.737
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.737
Ca_12213 Cicer arietinum Ca_12213 I 0.737
Cla006088 Citrullus lanatus Cla006088 I 0.737
29883.m002035 Ricinus communis 29883.m002035 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.737
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
Bo3g036000 Brassica oleracea Bo3g036000 I 0.731
LBD16 Arabidopsis thaliana AT2G42430 D 0.727
Bo3g036030 Brassica oleracea Bo3g036030 I 0.727
Bra000257 Brassica rapa Bra000257 I 0.727
Bra021737 Brassica rapa Bra021737 N 0.727
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.727
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.727
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.727
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.727
TCM_025849 Theobroma cacao TCM_025849 I 0.727
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.727
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.727
Pm017936 Prunus mume Pm017936 I 0.727
Pm028642 Prunus mume Pm028642 I 0.727
30072.m000955 Ricinus communis 30072.m000955 I 0.727
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.727
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.727
MDP0000131964 Malus domestica MDP0000131964 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.723
LBD20 Arabidopsis thaliana AT3G03760 I 0.717
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.717
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.717
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.717
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.717
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.717
OB02G44330 Oryza brachyantha OB02G44330 I 0.717
OBART03G10450 Oryza barthii OBART03G10450 I 0.717
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.717
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.717
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.717
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.717
OS03G0246900 Oryza sativa OS03G0246900 I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.717
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.717
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
30174.m008898 Ricinus communis 30174.m008898 I 0.717
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.717
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.717
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.717
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.717
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.717
MDP0000429067 Malus domestica MDP0000429067 I 0.717
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.717
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.717
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.717
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
Ca_20429 Cicer arietinum Ca_20429 I 0.708
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.707
Bo4g052270 Brassica oleracea Bo4g052270 N 0.707
Bra040311 Brassica rapa Bra040311 I 0.707
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.707
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.707
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.707
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.707
OS02G0820500 Oryza sativa OS02G0820500 I 0.707
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.707
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.707
Si019578m.g Setaria italica Si019578m.g I 0.707
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.707
Pm017935 Prunus mume Pm017935 I 0.707
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.707
mgf006429m Mimulus guttatus mgf006429m I 0.707
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.707
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.707
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.707
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.707
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.701
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.701