CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0010s20800
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0010s20800
T245888_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.727
0.727
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s20800.1
LOB
7
106
SCGACKFLRRKCTSECVFAPYFCYDQAAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEILEN
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0281s0190
Salix purpurea
SapurV1A.0281s0190
I
0.960
Ciclev10033354m.g
Citrus clementina
Ciclev10033354m.g
I
0.919
TCM_042730
Theobroma cacao
TCM_042730
I
0.909
LBD33
Vitis vinifera
VIT_13s0019g02060
N
0.909
30143.m001171
Ricinus communis
30143.m001171
N
0.909
Eucgr.G02955
Eucalyptus grandis
Eucgr.G02955
I
0.909
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.899
gene26330-v1.0-hybrid
Fragaria vesca
gene26330-v1.0-hybrid
N
0.879
PRUPE_ppa018815mg
Prunus persica
PRUPE_ppa018815mg
N
0.869
Pm018835
Prunus mume
Pm018835
N
0.869
cassava34632.m1
Manihot esculenta
cassava34632.m1
N
0.869
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.869
MDP0000133936
Malus domestica
MDP0000133936
N
0.869
cassava15468.m1
Manihot esculenta
cassava15468.m1
I
0.862
MDP0000123797
Malus domestica
MDP0000123797
N
0.859
GLYMA14G07260
Glycine max
GLYMA14G07260
N
0.838
PK00972.1
Cannabis sativa
PK00972.1
I
0.833
LjSGA_054888.1
Lotus japonicus
LjSGA_054888.1
I
0.830
GLYMA02G41710
Glycine max
GLYMA02G41710
N
0.828
Ca_16122
Cicer arietinum
Ca_16122
N
0.828
MTR_5g080470
Medicago truncatula
MTR_5g080470
N
0.808
Cagra.2117s0054
Capsella grandiflora
Cagra.2117s0054
N
0.798
Carubv10002921m.g
Capsella rubella
Carubv10002921m.g
N
0.798
LBD33
Arabidopsis lyrata
Al_scaffold_0006_527
N
0.788
LBD33
Arabidopsis thaliana
AT5G06080
N
0.788
Cucsa.165150
Cucumis sativus
Cucsa.165150
N
0.788
Cla004059
Citrullus lanatus
Cla004059
N
0.778
Bostr.13129s0366
Boechera stricta
Bostr.13129s0366
N
0.778
Bo9g176580
Brassica oleracea
Bo9g176580
N
0.768
Bra009161
Brassica rapa
Bra009161
N
0.768
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.767
Lus10004707.g
Linum usitatissimum
Lus10004707.g
N
0.758
mgf020558m
Mimulus guttatus
mgf020558m
N
0.750
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.747
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.744
TCM_005496
Theobroma cacao
TCM_005496
I
0.739
MDP0000254224
Malus domestica
MDP0000254224
I
0.739
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.737
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.737
Cla007068
Citrullus lanatus
Cla007068
I
0.737
Pm017936
Prunus mume
Pm017936
I
0.737
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.737
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.736
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.734
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.733
PK23380.1
Cannabis sativa
PK23380.1
I
0.731
Thhalv10015772m.g
Eutrema salsugineum
Thhalv10015772m.g
N
0.729
LBD18
Arabidopsis thaliana
AT2G45420
D
0.727
LBD29
Arabidopsis thaliana
AT3G58190
I
0.727
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.727
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.727
Bra004910
Brassica rapa
Bra004910
I
0.727
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.727
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.727
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.727
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.727
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.727
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.727
OB03G13890
Oryza brachyantha
OB03G13890
I
0.727
OBART03G03830
Oryza barthii
OBART03G03830
I
0.727
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.727
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.727
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.727
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.727
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.727
OS03G0149100
Oryza sativa
OS03G0149100
I
0.727
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.727
Si040019m.g
Setaria italica
Si040019m.g
I
0.727
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.727
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.727
30174.m008898
Ricinus communis
30174.m008898
I
0.727
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.727
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.727
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.727
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.727
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.727
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.727
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.727
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.727
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.727
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.727
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.727
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.723
Bra001087
Brassica rapa
Bra001087
I
0.721
OGLUM03G03710
Oryza glumaepatula
OGLUM03G03710
I
0.719
OLONG_020841
Oryza longistaminata
OLONG_020841
I
0.719
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.717
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.717
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.717
Bra040311
Brassica rapa
Bra040311
I
0.717
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.717
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.717
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.717
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.717
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.717
OB08G30680
Oryza brachyantha
OB08G30680
I
0.717
OBART03G10450
Oryza barthii
OBART03G10450
I
0.717
OBART08G23860
Oryza barthii
OBART08G23860
I
0.717
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.717
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.717
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.717
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.717
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.717
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.717
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.717
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.717
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.717
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.717
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.717
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.717
OS03G0246900
Oryza sativa
OS03G0246900
I
0.717
OS08G0563400
Oryza sativa
OS08G0563400
I
0.717
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.717
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.717
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.717
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.717
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.717
Aquca_003_00139
Aquilegia coerulea
Aquca_003_00139
N
0.717
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.717
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.717
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.717
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.717
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.717
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.717
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.717
Lus10040274.g
Linum usitatissimum
Lus10040274.g
N
0.713
Ca_19597
Cicer arietinum
Ca_19597
I
0.710
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.709
SapurV1A.1704s0040
Salix purpurea
SapurV1A.1704s0040
I
0.708
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.707
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.707
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.707
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.707
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.707
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.707
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.707
GSMUA_Achr11G02110_001
Musa acuminata
GSMUA_Achr11G02110_001
I
0.707
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.707
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.707
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.707
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.707
Si015156m.g
Setaria italica
Si015156m.g
I
0.707
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.707
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.707
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.707
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.707
Ca_12214
Cicer arietinum
Ca_12214
I
0.707
Cla021625
Citrullus lanatus
Cla021625
I
0.707
28428.m000040
Ricinus communis
28428.m000040
I
0.707
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.707
mgf020773m
Mimulus guttatus
mgf020773m
I
0.707
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.707
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.707
Ciclev10021843m.g
Citrus clementina
Ciclev10021843m.g
I
0.707
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.707
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.707
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.707
orange1.1g042813m.g
Citrus sinensis
orange1.1g042813m.g
I
0.707
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.707
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.707
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.705
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I
0.704