Gorai.011G267700 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.011G267700 T246997_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G267700.1 LOB 7 106

Links

Other LOB family TFs
Other Gossypium raimondii TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_042730 Theobroma cacao TCM_042730 I 0.909
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.869
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.851
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.848
Ciclev10033354m.g Citrus clementina Ciclev10033354m.g I 0.848
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I 0.848
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.838
PK00972.1 Cannabis sativa PK00972.1 I 0.833
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.828
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N 0.818
LBD33 Vitis vinifera VIT_13s0019g02060 N 0.818
Pm018835 Prunus mume Pm018835 N 0.818
30143.m001171 Ricinus communis 30143.m001171 N 0.818
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.818
MDP0000133936 Malus domestica MDP0000133936 N 0.808
Cla004059 Citrullus lanatus Cla004059 N 0.798
Cucsa.165150 Cucumis sativus Cucsa.165150 N 0.798
MDP0000123797 Malus domestica MDP0000123797 N 0.798
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.788
Ca_16122 Cicer arietinum Ca_16122 N 0.788
GLYMA02G41710 Glycine max GLYMA02G41710 N 0.778
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.773
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.768
MTR_5g080470 Medicago truncatula MTR_5g080470 N 0.768
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.768
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.768
LBD33 Arabidopsis thaliana AT5G06080 N 0.758
Bostr.13129s0366 Boechera stricta Bostr.13129s0366 N 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.756
Bo9g176580 Brassica oleracea Bo9g176580 N 0.747
Bra009161 Brassica rapa Bra009161 N 0.747
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.747
Lus10040274.g Linum usitatissimum Lus10040274.g N 0.747
LBD29 Arabidopsis thaliana AT3G58190 I 0.737
mgf020558m Mimulus guttatus mgf020558m N 0.729
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.727
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.727
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.727
Lus10004707.g Linum usitatissimum Lus10004707.g N 0.727
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.722
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
Bo4g108600 Brassica oleracea Bo4g108600 I 0.717
Bra014581 Brassica rapa Bra014581 I 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
PK23380.1 Cannabis sativa PK23380.1 I 0.716
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.713
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.711
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
Bo4g024620 Brassica oleracea Bo4g024620 I 0.707
Bo4g195520 Brassica oleracea Bo4g195520 I 0.707
Bo8g092560 Brassica oleracea Bo8g092560 I 0.707
Bra004910 Brassica rapa Bra004910 I 0.707
Bra040311 Brassica rapa Bra040311 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.707
Cla007068 Citrullus lanatus Cla007068 I 0.707
Cla021625 Citrullus lanatus Cla021625 I 0.707
Pm017936 Prunus mume Pm017936 I 0.707
30174.m008898 Ricinus communis 30174.m008898 I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.707
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.707
Aquca_003_00139 Aquilegia coerulea Aquca_003_00139 N 0.707
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.707
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.707
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.707
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.702
OBART03G03820 Oryza barthii OBART03G03820 I 0.700
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.700
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.700
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.700