OLONG_028429 (Oryza longistaminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OLONG_028429 T245611_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.820 0.820
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.820 0.820
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.787 0.787
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.787 0.787
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.753 0.753
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.753 0.753
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.753 0.753
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.742 0.742
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_028429-R1 LOB 33 122

Links

Other LOB family TFs
Other Oryza longistaminata TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB10G12360 Oryza brachyantha OB10G12360 I 0.944
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.895
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.867
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.865
OS10G0162600 Oryza sativa OS10G0162600 I 0.859
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.859
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.859
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.859
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.859
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.859
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.859
OB03G20590 Oryza brachyantha OB03G20590 I 0.857
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.856
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.854
TCM_005496 Theobroma cacao TCM_005496 I 0.837
MDP0000254224 Malus domestica MDP0000254224 I 0.837
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.830
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.820
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.819
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.813
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.809
PK25573.1 Cannabis sativa PK25573.1 I 0.809
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
Bra001087 Brassica rapa Bra001087 I 0.794
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.788
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.788
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.782
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.778
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.778
30174.m008898 Ricinus communis 30174.m008898 I 0.778
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.778
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.778
Cla007068 Citrullus lanatus Cla007068 I 0.778
Pm017936 Prunus mume Pm017936 I 0.778
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.775
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.768
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.768
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.768
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.768
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.768
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.768
Ca_20429 Cicer arietinum Ca_20429 I 0.764
Cla021625 Citrullus lanatus Cla021625 I 0.764
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.764
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.761
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.758
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.758
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.758
Pm028642 Prunus mume Pm028642 I 0.753
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.753
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.747
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.747
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.747
PK23185.1 Cannabis sativa PK23185.1 I 0.742
LBD19 Arabidopsis thaliana AT2G45410 D 0.742
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.737
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.737
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.736
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.735
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.733
PK23380.1 Cannabis sativa PK23380.1 I 0.731
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.730
Si019578m.g Setaria italica Si019578m.g I 0.730
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.730
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.727
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.727
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.727
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.727
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.727
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.723
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.722
F775_04528 Aegilops tauschii F775_04528 I 0.719
Bo4g195510 Brassica oleracea Bo4g195510 I 0.719
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.718
Cla007069 Citrullus lanatus Cla007069 I 0.717
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.717
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.717
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.717
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.717
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.714
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
Si015156m.g Setaria italica Si015156m.g I 0.708
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.708
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.708
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.708
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.707
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.707
TCM_005497 Theobroma cacao TCM_005497 I 0.707
Pm017935 Prunus mume Pm017935 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
mgf020735m Mimulus guttatus mgf020735m I 0.707
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.707
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.707
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.701
PK00972.1 Cannabis sativa PK00972.1 I 0.700