Cla007069 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla007069 T246337_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.798 0.798
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.798 0.798
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.788 0.788
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.788 0.788
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.778 0.778
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla007069 LOB 13 112

Links

Other LOB family TFs
Other Citrullus lanatus TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.919
Pm017935 Prunus mume Pm017935 I 0.909
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.909
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.899
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.899
MDP0000429067 Malus domestica MDP0000429067 I 0.899
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.889
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.889
PK25573.1 Cannabis sativa PK25573.1 I 0.889
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.879
30174.m008897 Ricinus communis 30174.m008897 I 0.879
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.879
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.879
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.869
TCM_005497 Theobroma cacao TCM_005497 I 0.869
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.869
mgf020735m Mimulus guttatus mgf020735m I 0.869
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.859
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.859
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.859
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.859
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.859
30174.m008898 Ricinus communis 30174.m008898 I 0.859
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.859
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.859
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.859
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.859
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.859
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.859
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.848
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.848
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.848
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.848
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.848
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.848
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.848
OBART03G10450 Oryza barthii OBART03G10450 I 0.848
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.848
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.848
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.848
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.848
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.848
OS03G0246900 Oryza sativa OS03G0246900 I 0.848
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.848
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.848
Cla007068 Citrullus lanatus Cla007068 I 0.848
Pm017936 Prunus mume Pm017936 I 0.848
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.848
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.848
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.848
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.848
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.848
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.848
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.838
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.838
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.838
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.838
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.838
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.838
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.838
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.838
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.828
Ca_19598 Cicer arietinum Ca_19598 I 0.828
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.828
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.828
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.819
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.818
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.818
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.818
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.818
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.808
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.808
OB10G12360 Oryza brachyantha OB10G12360 I 0.808
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.808
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.808
LBD18 Arabidopsis thaliana AT2G45420 D 0.798
Bo4g024620 Brassica oleracea Bo4g024620 I 0.798
Bo4g195520 Brassica oleracea Bo4g195520 I 0.798
Bra040311 Brassica rapa Bra040311 I 0.798
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.798
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.798
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.798
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.798
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.798
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.798
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.798
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.798
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.798
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.798
LBD19 Arabidopsis thaliana AT2G45410 D 0.788
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.788
Bra004910 Brassica rapa Bra004910 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.788
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.788
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.788
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.788
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.788
OS10G0162600 Oryza sativa OS10G0162600 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.788
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.788
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.788
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.788
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.780
LBD30 Arabidopsis thaliana AT4G00220 D 0.778
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.778
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.778
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.778
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.778
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.778
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.768
Bo2g097560 Brassica oleracea Bo2g097560 I 0.768
Bo9g002160 Brassica oleracea Bo9g002160 I 0.768
Bra008514 Brassica rapa Bra008514 I 0.768
Bra037323 Brassica rapa Bra037323 I 0.768
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.768
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.768
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.768
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.768
LBD31 Arabidopsis thaliana AT4G00210 I 0.758
Bra040312 Brassica rapa Bra040312 I 0.758
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.758
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
MDP0000254224 Malus domestica MDP0000254224 I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
Bo4g024610 Brassica oleracea Bo4g024610 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.747
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.747
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.747
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.747
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.747
Ca_20428 Cicer arietinum Ca_20428 I 0.747
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.747
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Bra004908 Brassica rapa Bra004908 I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.737
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.737
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
OB03G20590 Oryza brachyantha OB03G20590 I 0.737
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
Si015156m.g Setaria italica Si015156m.g I 0.737
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.737
Cla021625 Citrullus lanatus Cla021625 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
PK23185.1 Cannabis sativa PK23185.1 I 0.737
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.727
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.727
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.727
OB02G44330 Oryza brachyantha OB02G44330 I 0.727
OB08G30680 Oryza brachyantha OB08G30680 I 0.727
OBART08G23860 Oryza barthii OBART08G23860 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.727
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.727
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.727
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.727
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.727
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
OS08G0563400 Oryza sativa OS08G0563400 I 0.727
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.727
TCM_025849 Theobroma cacao TCM_025849 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
Pm028642 Prunus mume Pm028642 I 0.727
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.727
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.727
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.727
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.727
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
Bra037322 Brassica rapa Bra037322 I 0.717
F775_04528 Aegilops tauschii F775_04528 I 0.717
F775_22967 Aegilops tauschii F775_22967 I 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.717
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.717
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.717
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.717
Ca_20429 Cicer arietinum Ca_20429 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
MDP0000322059 Malus domestica MDP0000322059 I 0.717
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.717
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.707
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.707
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.707
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707