Bra004908 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra004908 T245035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.899 0.899
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.899 0.899
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004908.1-P LOB 15 114

Links

Other LOB family TFs
Other Brassica rapa TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g024610 Brassica oleracea Bo4g024610 I 0.970
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.909
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.909
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.909
LBD19 Arabidopsis thaliana AT2G45410 D 0.899
Bra040312 Brassica rapa Bra040312 I 0.889
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.889
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.879
PK25573.1 Cannabis sativa PK25573.1 I 0.798
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.788
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.778
MDP0000429067 Malus domestica MDP0000429067 I 0.778
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.778
Pm017935 Prunus mume Pm017935 I 0.778
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.778
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.778
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.768
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.768
30174.m008897 Ricinus communis 30174.m008897 I 0.768
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.768
mgf020735m Mimulus guttatus mgf020735m I 0.768
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.768
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.768
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.768
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.768
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.768
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.758
Bra037322 Brassica rapa Bra037322 I 0.758
Bo4g195510 Brassica oleracea Bo4g195510 I 0.758
TCM_005497 Theobroma cacao TCM_005497 I 0.758
Bo9g002150 Brassica oleracea Bo9g002150 I 0.758
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.758
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.758
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.758
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.747
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.747
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.747
Cla007069 Citrullus lanatus Cla007069 I 0.737
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.737
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.737
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.737
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.737
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.737
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.737
Ca_19598 Cicer arietinum Ca_19598 I 0.737
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
LBD31 Arabidopsis thaliana AT4G00210 I 0.737
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.737
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.737
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.737
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.737
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.737
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.727
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.727
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.727
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.727
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
30174.m008898 Ricinus communis 30174.m008898 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.717
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.717
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.717
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.713
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.707
Bo4g195520 Brassica oleracea Bo4g195520 I 0.707
Bra040311 Brassica rapa Bra040311 I 0.707
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.707
Cla002965 Citrullus lanatus Cla002965 I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.707
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.707
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707