POPTR_0014s06580 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0014s06580 T245901_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.828 0.828
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.828 0.828
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.778 0.778
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.778 0.778
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.737 0.737
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s06580.1 LOB 12 111

Links

Other LOB family TFs
Other Populus trichocarpa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.960
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.929
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.929
30174.m008897 Ricinus communis 30174.m008897 I 0.919
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.919
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.919
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.919
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.909
TCM_005497 Theobroma cacao TCM_005497 I 0.909
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.909
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.899
Pm017935 Prunus mume Pm017935 I 0.899
MDP0000429067 Malus domestica MDP0000429067 I 0.899
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.894
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.889
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.889
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.879
Cla007069 Citrullus lanatus Cla007069 I 0.879
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.879
PK25573.1 Cannabis sativa PK25573.1 I 0.879
mgf020735m Mimulus guttatus mgf020735m I 0.869
Ca_19598 Cicer arietinum Ca_19598 I 0.859
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.859
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.848
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.848
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.848
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.838
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.838
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.838
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.838
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.838
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.838
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.836
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.833
LBD19 Arabidopsis thaliana AT2G45410 D 0.828
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.828
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.828
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.828
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.828
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.828
OBART03G10450 Oryza barthii OBART03G10450 I 0.828
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.828
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.828
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.828
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.828
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.828
OS03G0246900 Oryza sativa OS03G0246900 I 0.828
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.828
30174.m008898 Ricinus communis 30174.m008898 I 0.828
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.828
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.828
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.818
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.818
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.818
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.818
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.818
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.818
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.818
Cla007068 Citrullus lanatus Cla007068 I 0.818
Pm017936 Prunus mume Pm017936 I 0.818
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.818
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.818
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.818
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.818
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.818
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.813
Bo4g195510 Brassica oleracea Bo4g195510 I 0.809
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.808
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.808
Bra040312 Brassica rapa Bra040312 I 0.798
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.798
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.798
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.798
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.798
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.798
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.798
TCM_005496 Theobroma cacao TCM_005496 I 0.793
LBD31 Arabidopsis thaliana AT4G00210 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.788
OB10G12360 Oryza brachyantha OB10G12360 I 0.788
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.788
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.788
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.788
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
Bo4g024610 Brassica oleracea Bo4g024610 I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Bra040311 Brassica rapa Bra040311 I 0.778
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.778
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.778
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.778
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.778
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.778
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.768
Bra004908 Brassica rapa Bra004908 I 0.768
Bra004910 Brassica rapa Bra004910 I 0.768
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.768
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.768
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.768
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.768
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.768
OS10G0162600 Oryza sativa OS10G0162600 I 0.768
Ca_20428 Cicer arietinum Ca_20428 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.768
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.765
Bo9g002150 Brassica oleracea Bo9g002150 I 0.758
Bra037322 Brassica rapa Bra037322 I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.758
Bo2g097560 Brassica oleracea Bo2g097560 I 0.747
Bra008514 Brassica rapa Bra008514 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.747
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.747
MDP0000254224 Malus domestica MDP0000254224 I 0.747
LBD30 Arabidopsis thaliana AT4G00220 D 0.737
Bo9g002160 Brassica oleracea Bo9g002160 I 0.737
Bra037323 Brassica rapa Bra037323 I 0.737
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.737
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
OB03G20590 Oryza brachyantha OB03G20590 I 0.737
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
Ca_20429 Cicer arietinum Ca_20429 I 0.737
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.737
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.727
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.727
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
TCM_025849 Theobroma cacao TCM_025849 I 0.727
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
Cla021625 Citrullus lanatus Cla021625 I 0.727
Pm028642 Prunus mume Pm028642 I 0.727
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.727
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.727
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.727
LBD20 Arabidopsis thaliana AT3G03760 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.717
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.717
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.717
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.717
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
MDP0000322059 Malus domestica MDP0000322059 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
PK23185.1 Cannabis sativa PK23185.1 I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.708
F775_04528 Aegilops tauschii F775_04528 I 0.707
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707