PGSC0003DMG400012757 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400012757 T245822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.753 0.753
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.753 0.753
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.712 0.712
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400033221 LOB 1 73

Links

Other LOB family TFs
Other Solanum tuberosum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000429067 Malus domestica MDP0000429067 I 0.863
Pm017935 Prunus mume Pm017935 I 0.863
30174.m008897 Ricinus communis 30174.m008897 I 0.836
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.836
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.836
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.836
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.836
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.822
PK25573.1 Cannabis sativa PK25573.1 I 0.822
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.808
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.795
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.795
Ca_19598 Cicer arietinum Ca_19598 I 0.781
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.781
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.781
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.781
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.781
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.781
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.781
30174.m008898 Ricinus communis 30174.m008898 I 0.781
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.781
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.781
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.781
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.767
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.767
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.767
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.767
PK23185.1 Cannabis sativa PK23185.1 I 0.767
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.767
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.767
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.767
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.767
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.767
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.767
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.767
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.767
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.767
OS03G0246900 Oryza sativa OS03G0246900 I 0.767
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.767
OBART03G10450 Oryza barthii OBART03G10450 I 0.767
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.767
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.767
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.767
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.767
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.767
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.767
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.767
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.753
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.753
LBD31 Arabidopsis thaliana AT4G00210 I 0.753
LBD19 Arabidopsis thaliana AT2G45410 D 0.753
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.753
Bra037322 Brassica rapa Bra037322 I 0.740
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.740
Bo9g002150 Brassica oleracea Bo9g002150 I 0.740
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.740
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.740
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.740
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.740
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.740
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.740
Bo4g024610 Brassica oleracea Bo4g024610 I 0.726
Bra040311 Brassica rapa Bra040311 I 0.726
Bo4g195520 Brassica oleracea Bo4g195520 I 0.726
Bra040312 Brassica rapa Bra040312 I 0.726
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.712
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.712
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.712
Ca_20428 Cicer arietinum Ca_20428 I 0.712
OB10G12360 Oryza brachyantha OB10G12360 I 0.712
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.712
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.712
Bo4g024620 Brassica oleracea Bo4g024620 I 0.712