Gorai.008G114300 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.008G114300 T246979_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.778 0.778
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.778 0.778
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.768 0.768
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.768 0.768
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.727 0.727
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G114300.1 LOB 10 109

Links

Other LOB family TFs
Other Gossypium raimondii TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf020735m Mimulus guttatus mgf020735m I 0.879
TCM_005497 Theobroma cacao TCM_005497 I 0.879
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.869
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.869
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.859
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.859
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.859
30174.m008897 Ricinus communis 30174.m008897 I 0.859
Pm017935 Prunus mume Pm017935 I 0.848
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.848
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.848
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.848
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.848
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.848
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.838
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.828
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.828
MDP0000429067 Malus domestica MDP0000429067 I 0.828
Cla007069 Citrullus lanatus Cla007069 I 0.828
PK25573.1 Cannabis sativa PK25573.1 I 0.828
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.818
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.813
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.808
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.808
Ca_19598 Cicer arietinum Ca_19598 I 0.798
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.798
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.798
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.798
30174.m008898 Ricinus communis 30174.m008898 I 0.798
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.798
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.798
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.798
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.798
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.788
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
Cla007068 Citrullus lanatus Cla007068 I 0.788
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.788
Pm017936 Prunus mume Pm017936 I 0.788
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.788
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.788
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.788
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.787
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.780
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.779
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.778
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Bra040311 Brassica rapa Bra040311 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
Ca_19597 Cicer arietinum Ca_19597 I 0.774
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.768
LBD19 Arabidopsis thaliana AT2G45410 D 0.768
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.768
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.768
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.768
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.768
Bra004910 Brassica rapa Bra004910 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.768
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.768
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.768
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.768
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.768
LBD31 Arabidopsis thaliana AT4G00210 I 0.768
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
OB10G12360 Oryza brachyantha OB10G12360 I 0.768
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.767
Bo4g195510 Brassica oleracea Bo4g195510 I 0.764
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.758
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.758
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.758
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.758
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.758
Bra040312 Brassica rapa Bra040312 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.756
Ca_20429 Cicer arietinum Ca_20429 I 0.753
MDP0000254224 Malus domestica MDP0000254224 I 0.750
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.747
Bo4g024610 Brassica oleracea Bo4g024610 I 0.747
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.747
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.739
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
Bra004908 Brassica rapa Bra004908 I 0.737
Bo9g002160 Brassica oleracea Bo9g002160 I 0.737
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
Bra037323 Brassica rapa Bra037323 I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
OB03G20590 Oryza brachyantha OB03G20590 I 0.736
Bra001087 Brassica rapa Bra001087 I 0.735
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.734
Bra008514 Brassica rapa Bra008514 I 0.727
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.727
Bo2g097560 Brassica oleracea Bo2g097560 I 0.727
LBD30 Arabidopsis thaliana AT4G00220 D 0.727
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.727
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.727
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.727
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.727
Ca_20428 Cicer arietinum Ca_20428 I 0.727
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.727
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
Bra037322 Brassica rapa Bra037322 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.707
LBD20 Arabidopsis thaliana AT3G03760 I 0.707
Bo1g153580 Brassica oleracea Bo1g153580 I 0.707
Bra036436 Brassica rapa Bra036436 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.707
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.707
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.707