Bra040312 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra040312 T245094_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.899 0.899
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.899 0.899
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040312.1-P LOB 18 117

Links

Other LOB family TFs
Other Brassica rapa TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g195510 Brassica oleracea Bo4g195510 I 0.966
LBD19 Arabidopsis thaliana AT2G45410 D 0.899
Bo4g024610 Brassica oleracea Bo4g024610 I 0.899
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.899
Bra004908 Brassica rapa Bra004908 I 0.889
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.889
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.889
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.869
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.859
MDP0000429067 Malus domestica MDP0000429067 I 0.818
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.808
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.808
Pm017935 Prunus mume Pm017935 I 0.808
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.798
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.798
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.798
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.798
mgf020735m Mimulus guttatus mgf020735m I 0.798
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.798
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.798
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.798
PK25573.1 Cannabis sativa PK25573.1 I 0.798
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.788
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.788
30174.m008897 Ricinus communis 30174.m008897 I 0.788
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.788
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.788
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.780
TCM_005497 Theobroma cacao TCM_005497 I 0.778
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.778
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.778
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.778
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.768
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.768
Bo9g002150 Brassica oleracea Bo9g002150 I 0.758
Bra037322 Brassica rapa Bra037322 I 0.758
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.758
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.758
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.758
Ca_19598 Cicer arietinum Ca_19598 I 0.758
Cla007069 Citrullus lanatus Cla007069 I 0.758
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.758
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.758
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.758
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.756
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.753
Ca_20429 Cicer arietinum Ca_20429 I 0.753
LBD31 Arabidopsis thaliana AT4G00210 I 0.747
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.747
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.747
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.747
OBART03G10450 Oryza barthii OBART03G10450 I 0.747
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.747
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.747
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.747
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.747
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.747
OS03G0246900 Oryza sativa OS03G0246900 I 0.747
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.747
30174.m008898 Ricinus communis 30174.m008898 I 0.747
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.747
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.747
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.747
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.747
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.747
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.747
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.747
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.745
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.744
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.744
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.737
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.737
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.737
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.737
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.737
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.737
Cla007068 Citrullus lanatus Cla007068 I 0.737
Pm017936 Prunus mume Pm017936 I 0.737
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.737
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.737
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.737
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.737
MDP0000254224 Malus domestica MDP0000254224 I 0.728
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
Bra040311 Brassica rapa Bra040311 I 0.727
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.727
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.727
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.727
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.726
OB03G20590 Oryza brachyantha OB03G20590 I 0.725
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.725
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.722
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
OB10G12360 Oryza brachyantha OB10G12360 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
Bra004910 Brassica rapa Bra004910 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.707
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.701