CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK23185.1
(
Cannabis sativa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
PK23185.1
T247392_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.876
0.876
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.876
0.876
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.876
0.876
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.876
0.876
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.730
0.730
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.730
0.730
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.730
0.730
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.730
0.730
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG
CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.730
0.730
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK23185.1
LOB
1
90
KCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELSYLQA
Links
Other
LOB
family TFs
Other
Cannabis sativa
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.921
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.899
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.888
OB10G12360
Oryza brachyantha
OB10G12360
I
0.876
Ca_19597
Cicer arietinum
Ca_19597
I
0.871
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.869
Pm017936
Prunus mume
Pm017936
I
0.869
Cla007068
Citrullus lanatus
Cla007068
I
0.859
30174.m008898
Ricinus communis
30174.m008898
I
0.859
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.859
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.859
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.859
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.859
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.848
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.848
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.848
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.848
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.848
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.843
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.838
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.838
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.838
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.837
POPTR_0014s06590
Populus trichocarpa
POPTR_0014s06590
I
0.831
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.828
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.828
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.828
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.828
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.828
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.828
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.828
PK25573.1
Cannabis sativa
PK25573.1
I
0.820
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.818
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.818
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.818
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.818
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.818
OBART03G10450
Oryza barthii
OBART03G10450
I
0.818
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.818
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.818
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.818
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.818
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.818
OS03G0246900
Oryza sativa
OS03G0246900
I
0.818
MDP0000254224
Malus domestica
MDP0000254224
I
0.815
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.811
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.809
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.808
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.808
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.808
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.808
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.808
TCM_005496
Theobroma cacao
TCM_005496
I
0.804
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.800
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.798
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.798
Cla021625
Citrullus lanatus
Cla021625
I
0.798
LBD18
Arabidopsis thaliana
AT2G45420
D
0.788
LBD30
Arabidopsis thaliana
AT4G00220
D
0.788
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.788
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.788
LBD30
Arabidopsis lyrata
fgenesh2_kg.6__3680__AT4G00220.1
I
0.788
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.788
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.788
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.788
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.788
Cagra.1261s0014
Capsella grandiflora
Cagra.1261s0014
I
0.788
Carubv10001875m.g
Capsella rubella
Carubv10001875m.g
I
0.788
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.788
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.788
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.788
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.788
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.787
OB03G20590
Oryza brachyantha
OB03G20590
I
0.780
Bo9g002160
Brassica oleracea
Bo9g002160
I
0.778
Bra004910
Brassica rapa
Bra004910
I
0.778
Bra037323
Brassica rapa
Bra037323
I
0.778
Bra040311
Brassica rapa
Bra040311
I
0.778
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.768
Thhalv10028937m.g
Eutrema salsugineum
Thhalv10028937m.g
I
0.768
PGSC0003DMG400012757
Solanum tuberosum
PGSC0003DMG400012757
I
0.767
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.764
Pm028642
Prunus mume
Pm028642
I
0.764
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.758
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.758
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.758
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.758
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.758
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.758
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.758
OS10G0162600
Oryza sativa
OS10G0162600
I
0.758
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.753
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.753
Bo2g097560
Brassica oleracea
Bo2g097560
I
0.747
Bra008514
Brassica rapa
Bra008514
I
0.747
GLYMA09G40500
Glycine max
GLYMA09G40500
I
0.747
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.747
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.747
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.747
POPTR_0047s00280
Populus trichocarpa
POPTR_0047s00280
I
0.744
OLONG_028429
Oryza longistaminata
OLONG_028429
I
0.742
Cla007069
Citrullus lanatus
Cla007069
I
0.737
Pm017935
Prunus mume
Pm017935
I
0.737
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.737
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.736
LBD19
Arabidopsis thaliana
AT2G45410
D
0.730
Si015156m.g
Setaria italica
Si015156m.g
I
0.730
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.727
30174.m008897
Ricinus communis
30174.m008897
I
0.727
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.727
Lus10009298.g
Linum usitatissimum
Lus10009298.g
I
0.727
MDP0000429067
Malus domestica
MDP0000429067
I
0.727
chr1.CM1255.40.nc
Lotus japonicus
chr1.CM1255.40.nc
I
0.727
chr3.LjT44N20.90.nd
Lotus japonicus
chr3.LjT44N20.90.nd
I
0.725
OBART02G37570
Oryza barthii
OBART02G37570
I
0.724
F775_04528
Aegilops tauschii
F775_04528
I
0.719
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.719
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.717
GLYMA03G02631
Glycine max
GLYMA03G02631
I
0.717
GSMUA_Achr4G28810_001
Musa acuminata
GSMUA_Achr4G28810_001
I
0.717
MTR_7g075230
Medicago truncatula
MTR_7g075230
I
0.717
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.717
Sb01g024400
Sorghum bicolor
Sb01g024400
I
0.717
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.717
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.717
Ca_19598
Cicer arietinum
Ca_19598
I
0.717
Cla006088
Citrullus lanatus
Cla006088
I
0.717
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.717
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.717
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.717
Gorai.007G091600
Gossypium raimondii
Gorai.007G091600
I
0.717
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.717
SapurV1A.0532s0200
Salix purpurea
SapurV1A.0532s0200
I
0.717
Cucsa.362830
Cucumis sativus
Cucsa.362830
I
0.714
mgf026090m
Mimulus guttatus
mgf026090m
I
0.712
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.708
Si019578m.g
Setaria italica
Si019578m.g
I
0.708
LBD20
Arabidopsis thaliana
AT3G03760
I
0.707
Bo1g153580
Brassica oleracea
Bo1g153580
I
0.707
Bra036436
Brassica rapa
Bra036436
I
0.707
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.707
MTR_7g074990
Medicago truncatula
MTR_7g074990
I
0.707
cassava40137.m1
Manihot esculenta
cassava40137.m1
I
0.707
Cucsa.257700
Cucumis sativus
Cucsa.257700
I
0.707
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.707
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.707
mgf020735m
Mimulus guttatus
mgf020735m
I
0.707
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.707
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.707
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.707
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.707
Ciclev10021843m.g
Citrus clementina
Ciclev10021843m.g
I
0.707
Eucgr.K01522
Eucalyptus grandis
Eucgr.K01522
I
0.707
orange1.1g042813m.g
Citrus sinensis
orange1.1g042813m.g
I
0.707
Thhalv10021301m.g
Eutrema salsugineum
Thhalv10021301m.g
I
0.707
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.705
LjT35F15.70.nd
Lotus japonicus
LjT35F15.70.nd
I
0.703
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.701
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.701