Gorai.007G346200 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.007G346200 T246974_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.768 0.768
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.768 0.768
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.768 0.768
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.768 0.768
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.727 0.727
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.727 0.727
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G346200.1 LOB 42 141

Links

Other LOB family TFs
Other Gossypium raimondii TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_025849 Theobroma cacao TCM_025849 I 0.960
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.949
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.949
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.949
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.939
LBD20 Arabidopsis thaliana AT3G03760 I 0.929
Bo1g153580 Brassica oleracea Bo1g153580 I 0.929
Bra036436 Brassica rapa Bra036436 I 0.929
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.929
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.929
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.929
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.929
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.929
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.929
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.919
Pm028642 Prunus mume Pm028642 I 0.919
30072.m000955 Ricinus communis 30072.m000955 I 0.919
MDP0000322059 Malus domestica MDP0000322059 I 0.919
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.909
mgf006429m Mimulus guttatus mgf006429m I 0.909
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.909
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.899
Cla002965 Citrullus lanatus Cla002965 I 0.889
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.889
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.869
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.869
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.869
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.869
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.859
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.859
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.859
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.859
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.848
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.839
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.838
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.838
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.830
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.828
Ca_19716 Cicer arietinum Ca_19716 I 0.818
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.816
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.816
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.808
Cla007068 Citrullus lanatus Cla007068 I 0.808
Pm017936 Prunus mume Pm017936 I 0.808
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.808
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.808
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.808
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.808
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.808
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.798
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.798
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.798
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.798
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.798
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.798
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.798
OS03G0246900 Oryza sativa OS03G0246900 I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
30174.m008898 Ricinus communis 30174.m008898 I 0.798
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.798
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.798
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.798
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
TCM_005496 Theobroma cacao TCM_005496 I 0.793
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.788
Bo2g097560 Brassica oleracea Bo2g097560 I 0.788
Bra008514 Brassica rapa Bra008514 I 0.788
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.788
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.788
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.788
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.788
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.788
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.788
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.788
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.788
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.788
Bo9g002160 Brassica oleracea Bo9g002160 I 0.778
Bra037323 Brassica rapa Bra037323 I 0.778
Bra040311 Brassica rapa Bra040311 I 0.778
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.778
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.778
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.778
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.778
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.778
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
LBD18 Arabidopsis thaliana AT2G45420 D 0.768
LBD30 Arabidopsis thaliana AT4G00220 D 0.768
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.768
Bo4g024620 Brassica oleracea Bo4g024620 I 0.768
Bo4g195520 Brassica oleracea Bo4g195520 I 0.768
Bra004910 Brassica rapa Bra004910 I 0.768
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.768
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.768
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.768
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.768
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.768
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.768
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.768
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.768
OS10G0162600 Oryza sativa OS10G0162600 I 0.768
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.768
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.768
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.768
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.768
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.768
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
Ca_12213 Cicer arietinum Ca_12213 I 0.758
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.758
Bo3g036000 Brassica oleracea Bo3g036000 I 0.753
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.747
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.747
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.747
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.747
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.747
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.747
TCM_004106 Theobroma cacao TCM_004106 I 0.747
29883.m002035 Ricinus communis 29883.m002035 I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.747
MDP0000145761 Malus domestica MDP0000145761 I 0.747
MDP0000429067 Malus domestica MDP0000429067 I 0.747
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.747
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.747
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.747
PK25573.1 Cannabis sativa PK25573.1 I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.747
Bo3g036030 Brassica oleracea Bo3g036030 I 0.737
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
Bra000257 Brassica rapa Bra000257 I 0.737
Bra004693 Brassica rapa Bra004693 I 0.737
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.737
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.737
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.737
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.737
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.737
TCM_005497 Theobroma cacao TCM_005497 I 0.737
Ca_19598 Cicer arietinum Ca_19598 I 0.737
Pm017935 Prunus mume Pm017935 I 0.737
Pm020629 Prunus mume Pm020629 I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.737
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.737
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.737
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.737
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.737
MDP0000254224 Malus domestica MDP0000254224 I 0.737
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.737
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.737
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.733
LBD16 Arabidopsis thaliana AT2G42430 D 0.727
Bra016877 Brassica rapa Bra016877 I 0.727
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
OB03G20590 Oryza brachyantha OB03G20590 I 0.727
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.727
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.727
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.727
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.727
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.727
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.727
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.727
Cla006088 Citrullus lanatus Cla006088 I 0.727
Cla007069 Citrullus lanatus Cla007069 I 0.727
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.727
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.727
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.727
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.727
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.727
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.718
Bo4g024610 Brassica oleracea Bo4g024610 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
Bra037322 Brassica rapa Bra037322 I 0.717
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.717
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.717
OB08G30680 Oryza brachyantha OB08G30680 I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.717
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.717
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
Bra004908 Brassica rapa Bra004908 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
OB02G44330 Oryza brachyantha OB02G44330 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.707
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
OS02G0820500 Oryza sativa OS02G0820500 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.707
Si019578m.g Setaria italica Si019578m.g I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
Cla006087 Citrullus lanatus Cla006087 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.707
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
mgf020735m Mimulus guttatus mgf020735m I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.707
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.707
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.707
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.702