LBD3 (Vitis vinifera)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 VIT_19s0027g01120 T246277_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.909 0.909
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_19s0027g01120.t01 LOB 13 111

Links

Other LOB family TFs
Other Vitis vinifera TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m014236 Ricinus communis 30170.m014236 I
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I
Bo6g120460 Brassica oleracea Bo6g120460 I
Bra008259 Brassica rapa Bra008259 I
Bra015750 Brassica rapa Bra015750 I
cassava21054.m1 Manihot esculenta cassava21054.m1 I
cassava21580.m1 Manihot esculenta cassava21580.m1 I
Ca_04804 Cicer arietinum Ca_04804 N
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I
Cla023834 Citrullus lanatus Cla023834 I
Cucsa.272370 Cucumis sativus Cucsa.272370 I
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I
GLYMA04G01651 Glycine max GLYMA04G01651 N
GLYMA06G01741 Glycine max GLYMA06G01741 N
Gorai.002G113300 Gossypium raimondii Gorai.002G113300 I
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I
Lus10030723.g Linum usitatissimum Lus10030723.g I
mgf018675m Mimulus guttatus mgf018675m I
mgf023466m Mimulus guttatus mgf023466m I
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I
Pm022916 Prunus mume Pm022916 I
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I
PRUPE_ppa022238mg Prunus persica PRUPE_ppa022238mg I
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I
TCM_034835 Theobroma cacao TCM_034835 I
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I
CUC3 Vitis vinifera VIT_18s0122g00800 I