Pm003744 (Prunus mume)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pm003744 T246363_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm003744 LOB 1 33

Links

Other LOB family TFs
Other Prunus mume TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000147901 Angiostrongylus cantonensis ACAC_0000147901 I 0.000
ACOC_0000995801 Angiostrongylus costaricensis ACOC_0000995801 I 0.000
ANCCAN_26375 Ancylostoma caninum ANCCAN_26375 I 0.000
ANCCEY_00898 Ancylostoma ceylanicum ANCCEY_00898 I 0.000
ANCDUO_18427 Ancylostoma duodenale ANCDUO_18427 I 0.000
ASIM_0002143001 Anisakis simplex ASIM_0002143001 I 0.000
ASU_09163 Ascaris suum ASU_09163 I 0.000
Bm7134 Brugia malayi Bm7134 I 0.000
BXY_0595700 Bursaphelenchus xylophilus BXY_0595700 I 0.000
CBN05533 Caenorhabditis brenneri CBN05533 I 0.000
CRE24477 Caenorhabditis remanei CRE24477 I 0.000
DICVIV_03386 Dictyocaulus viviparus DICVIV_03386 I 0.000
EEL_0000525201 Elaeophora elaphi EEL_0000525201 I 0.000
EVEC_0001194701 Enterobius vermicularis EVEC_0001194701 I 0.000
GPLIN_001307100 Globodera pallida GPLIN_001307100 I 0.000
HCOI01068300 Haemonchus contortus HCOI01068300 I 0.000
HCOI02160700 Haemonchus contortus HCOI02160700 I 0.000
HPLM_0000711501 Haemonchus placei HPLM_0000711501 I 0.000
L596_g2693 Steinernema carpocapsae L596_g2693 I 0.000
L889_g11692 Steinernema feltiae L889_g11692 I 0.000
L892_g8723 Steinernema scapterisci L892_g8723 I 0.000
L893_g11169 Steinernema glaseri L893_g11169 I 0.000
L898_g2249 Steinernema monticolum L898_g2249 I 0.000
LOAG_00893 Loa loa LOAG_00893 I 0.000
maker-nMf.1.1.scaf00003-augustus-gene-0.28 Meloidogyne floridensis maker-nMf.1.1.scaf00003-augustus-gene-0.28 I 0.000
MhA1_Contig45.frz3.gene23 Meloidogyne hapla MhA1_Contig45.frz3.gene23 I 0.000
Minc01117 Meloidogyne incognita Minc01117 I 0.000
nAv.1.0.1.g08193 Acanthocheilonema viteae nAv.1.0.1.g08193 I 0.000
nDi.2.2.2.g00651 Dirofilaria immitis nDi.2.2.2.g00651 I 0.000
NECAME_17957 Necator americanus NECAME_17957 I 0.000
nLs.2.1.2.g02012 Litomosoides sigmodontis nLs.2.1.2.g02012 I 0.000
nOo.2.0.1.g00486 Onchocerca ochengi nOo.2.0.1.g00486 I 0.000
RSKR_0000225500 Rhabditophanes kr3021 RSKR_0000225500 I 0.000
scaffold299-EXSNAP2012.1 Pristionchus exspectatus scaffold299-EXSNAP2012.1 I 0.000
SMUV_0000924801 Syphacia muris SMUV_0000924801 I 0.000
SPAL_0001350300 Strongyloides papillosus SPAL_0001350300 I 0.000
SSTP_0000713800 Strongyloides stercoralis SSTP_0000713800 I 0.000
SVE_1815200 Strongyloides venezuelensis SVE_1815200 I 0.000
TCLT_0000655501 Thelazia callipaeda TCLT_0000655501 I 0.000
TELCIR_14928 Teladorsagia circumcincta TELCIR_14928 I 0.000
TELCIR_18811 Teladorsagia circumcincta TELCIR_18811 I 0.000
Y75B8A.6 Caenorhabditis elegans WBGene00013543 D 0.000
WBGene00245177 Onchocerca volvulus WBGene00245177 I 0.000
WUBG_12123 Wuchereria bancrofti WUBG_12123 I 0.000