CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

gw1.42.84.1 *(Physcomitrella patens)* LOB
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03195 (DUF260)	IPR004883	gw1.42.84.1	T246561_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD18 M06962_2.00	Arabidopsis thaliana	SCGGRRAWHVHGSMRNNDN	NHNNYKSCDBDWTYYCCGS	Dap-seq OMalley et al.(2016) LBD18_col_a	0.839	0.839
LBD18 M06963_2.00	Arabidopsis thaliana	CDBDWTTTMHGSHRN	NYDSCDKAAAWHVHG	Dap-seq OMalley et al.(2016) LBD18_colamp_a	0.839	0.839
LBD16 M00870_2.00	Arabidopsis thaliana	DNHHYVCGG	CCGBRDDNH	PBM Franco-Zorrilla et al.(2014) LBD16	0.793	0.793
LBD16 M06958_2.00	Arabidopsis thaliana	SCGGAAAWNVCGSMR	YKSCGBNWTTTCCGS	Dap-seq OMalley et al.(2016) ASL18_col_a	0.793	0.793
LBD16 M06959_2.00	Arabidopsis thaliana	SCDBDWTTYVCGSHDN	NHDSCGBRAAWHVHGS	Dap-seq OMalley et al.(2016) ASL18_colamp_a	0.793	0.793
LBD30 M01066_2.00	Arabidopsis thaliana	BVWWWHVNGG	CCNBDWWWBV	PBM Sullivan et al.(2014) pTH7467	0.759	0.759
LBD30 M01067_2.00	Arabidopsis thaliana	VWWWNVNGGD	HCCNBNWWWB	PBM Sullivan et al.(2014) pTH7616	0.759	0.759
LBD19 M06960_2.00	Arabidopsis thaliana	CCKKAAAWHMMGSND	HNSCKKDWTTTMMGG	Dap-seq OMalley et al.(2016) LBD19_col_a	0.713	0.713
LBD19 M06961_2.00	Arabidopsis thaliana	WWYCCGG	CCGGRWW	Dap-seq OMalley et al.(2016) LBD19_colamp_a	0.713	0.713
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
gw1.42.84.1	LOB	5	92	PCGACKFLRRKCVRGCIFAPYFGAEQGAARFAAVHKIFGASNVAKLLLHIPVPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQV

Links
Other LOB family TFs
Other *Physcomitrella patens* TFs

320 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA024398	Oryza indica	BGIOSGA024398	N
OB07G18470	Oryza brachyantha	OB07G18470	N
OBART07G12230	Oryza barthii	OBART07G12230	N
OGLUM07G11710	Oryza glumaepatula	OGLUM07G11710	N
OGLUM07G11720	Oryza glumaepatula	OGLUM07G11720	N
ONIVA07G11150	Oryza nivara	ONIVA07G11150	N
ORGLA10G0057400	Oryza glaberrima	ORGLA10G0057400	N
ORUFI07G12350	Oryza rufipogon	ORUFI07G12350	N
OS07G0434300	Oryza sativa	OS07G0434300	N