evm.TU.supercontig_50.43 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.supercontig_50.43 T246895_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.919 0.919
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.919 0.919
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.919 0.919
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.788 0.788
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.788 0.788
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.747 0.747
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.747 0.747
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.707 0.707
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_50.43 LOB 9 108

Links

Other LOB family TFs
Other Carica papaya TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009185 Calypte anna Aan_R009185 I
Afo_R007523 Aptenodytes forsteri Afo_R007523 I
Alligator_sinensis_CCG009047.1 Alligator sinensis Alligator_sinensis_CCG009047.1 I
Brh_R003401 Buceros rhinoceros Brh_R003401 I
Cmyd_10016754 Chelonia mydas Cmyd_10016754 I
ZNF276 Anolis carolinensis ENSACAG00000008103 I
ENSAMEG00000001273 Ailuropoda melanoleuca ENSAMEG00000001273 I
ENSAMXG00000015046 Astyanax mexicanus ENSAMXG00000015046 I
ENSAPLG00000006256 Anas platyrhynchos ENSAPLG00000006256 I
ZNF276 Bos taurus ENSBTAG00000001904 I
ZNF276 Canis familiaris ENSCAFG00000019816 I
ZNF276 Callithrix jacchus ENSCJAG00000010721 I
ZNF276 Cavia porcellus ENSCPOG00000002334 I
ENSCSAG00000002787 Chlorocebus sabaeus ENSCSAG00000002787 I
ZNF276 Dasypus novemcinctus ENSDNOG00000001856 I
ENSDORG00000012257 Dipodomys ordii ENSDORG00000012257 I
ZNF276 Equus caballus ENSECAG00000019563 I
ENSEEUG00000012574 Erinaceus europaeus ENSEEUG00000012574 I
ENSETEG00000007978 Echinops telfairi ENSETEG00000007978 I
ENSFALG00000003070 Ficedula albicollis ENSFALG00000003070 I
ZNF276 Felis catus ENSFCAG00000003794 I
ZNF276 Homo sapiens ENSG00000158805 D
ZNF276 Gasterosteus aculeatus ENSGACG00000002104 I
ZNF276 Gallus gallus ENSGALG00000000513 I
ZNF276 Gorilla gorilla ENSGGOG00000010960 I
ENSGMOG00000003784 Gadus morhua ENSGMOG00000003784 I
ZNF276 Loxodonta africana ENSLAFG00000018198 I
ENSLOCG00000002928 Lepisosteus oculatus ENSLOCG00000002928 I
ENSMEUG00000001901 Macropus eugenii ENSMEUG00000001901 I
ZNF276 Meleagris gallopavo ENSMGAG00000008195 I
ZNF276 Microcebus murinus ENSMICG00000003291 I
ZNF276 Myotis lucifugus ENSMLUG00000013641 I
ZNF276 Macaca mulatta ENSMMUG00000002506 I
ENSMMUP00000003371 Macaca fascicularis ENSMMUP00000003371 I
ZNF276 Monodelphis domestica ENSMODG00000003479 I
ENSMPUG00000007237 Mustela putorius furo ENSMPUG00000007237 I
Zfp276 Mus musculus ENSMUSG00000001065 I
ENSNLEG00000015731 Nomascus leucogenys ENSNLEG00000015731 I
ZNF276 Ornithorhynchus anatinus ENSOANG00000004837 I
ENSOARG00000014354 Ovis aries ENSOARG00000014354 I
ZNF276 Oryctolagus cuniculus ENSOCUG00000008960 I
ZNF276 Otolemur garnettii ENSOGAG00000004891 I
ENSONIG00000010959 Oreochromis niloticus ENSONIG00000010959 I
ZNF276 Ochotona princeps ENSOPRG00000016172 I
ZNF276 Oryzias latipes ENSORLG00000015289 I
ENSP00000415836-D1 Bos grunniens ENSP00000415836-D1 I
ENSPANG00000022228 Papio anubis ENSPANG00000022228 I
ZNF276 Procavia capensis ENSPCAG00000001610 I
ENSPFOG00000011742 Poecilia formosa ENSPFOG00000011742 I
ENSPSIG00000009997 Pelodiscus sinensis ENSPSIG00000009997 I
ZNF276 Pan troglodytes ENSPTRG00000008487 I
Zfp276 Rattus norvegicus ENSRNOG00000016631 I
ZNF276 Sorex araneus ENSSARG00000003731 I
ENSSHAG00000006045 Sarcophilus harrisii ENSSHAG00000006045 I
ZNF276 Sus scrofa ENSSSCG00000029228 I
ENSSTOG00000013982 Ictidomys tridecemlineatus ENSSTOG00000013982 I
ZNF276 Taeniopygia guttata ENSTGUG00000007961 I
ZNF276 Tetraodon nigroviridis ENSTNIG00000008839 I
ZNF276 Takifugu rubripes ENSTRUG00000005087 I
ZNF276 Tursiops truncatus ENSTTRG00000004416 I
ENSXMAG00000002903 Xiphophorus maculatus ENSXMAG00000002903 I
Gfo_R000535 Geospiza fortis Gfo_R000535 I
Myotis_brandtii_ZNF276_10003797 Myotis brandtii Myotis_brandtii_ZNF276_10003797 I
Ogr16798 Ophisaurus gracilis Ogr16798 I
Pvit_16300 Pogona vitticeps Pvit_16300 I
znf276 Xenopus tropicalis XB-GENE-983669 I
znf276.S Xenopus laevis XB-GENE-983672 I