Gorai.011G267700 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.011G267700 T246997_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G267700.1 LOB 7 106

Links

Other LOB family TFs
Other Gossypium raimondii TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N
BGIOSGA001192 Oryza indica BGIOSGA001192 N
BGIOSGA001193 Oryza indica BGIOSGA001193 N
Bo9g003750 Brassica oleracea Bo9g003750 N
Bra037388 Brassica rapa Bra037388 N
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N
GRMZM2G057955 Zea mays GRMZM2G057955 N
LPERR01G19720 Leersia perrieri LPERR01G19720 N
LPERR01G19750 Leersia perrieri LPERR01G19750 N
Lus10005949.g Linum usitatissimum Lus10005949.g N
OB01G32460 Oryza brachyantha OB01G32460 N
OB01G32480 Oryza brachyantha OB01G32480 N
OBART01G22950 Oryza barthii OBART01G22950 N
OBART01G22980 Oryza barthii OBART01G22980 N
OGLUM01G26700 Oryza glumaepatula OGLUM01G26700 N
OGLUM01G26760 Oryza glumaepatula OGLUM01G26760 N
OLONG_010128 Oryza longistaminata OLONG_010128 N
OMERI01G21040 Oryza meridionalis OMERI01G21040 N
OPUNC01G23150 Oryza punctata OPUNC01G23150 N
ORGLA01G0184700 Oryza glaberrima ORGLA01G0184700 N
ORUFI01G25760 Oryza rufipogon ORUFI01G25760 N
ORUFI01G25800 Oryza rufipogon ORUFI01G25800 N
Pavir.Eb02165 Panicum virgatum Pavir.Eb02165 N
Pavir.J30777 Panicum virgatum Pavir.J30777 N
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N
Sb03g028170 Sorghum bicolor Sb03g028170 N
TCM_015351 Theobroma cacao TCM_015351 N
TRAES3BF020200120CFD_g Triticum aestivum TRAES3BF020200120CFD_g N
Traes_3DL_30CF35BB3 Triticum aestivum Traes_3DL_30CF35BB3 N
TRIUR3_10842 Triticum urartu TRIUR3_10842 N