Bo03856s010 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo03856s010 T253045_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo03856s010.1 MADS box 10 54

Links

Other MADS box family TFs
Other Brassica oleracea TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R015950 Aptenodytes forsteri Afo_R015950 N
Brh_R002527 Buceros rhinoceros Brh_R002527 N
ENSAMEG00000015567 Ailuropoda melanoleuca ENSAMEG00000015567 N
RFX8 Bos taurus ENSBTAG00000033998 I
RFX8 Canis familiaris ENSCAFG00000002190 I
rfx1/2/3 Ciona intestinalis ENSCING00000009186 I
ENSCPOG00000022483 Cavia porcellus ENSCPOG00000022483 N
ENSCSAG00000017155 Chlorocebus sabaeus ENSCSAG00000017155 I
ENSCSAVG00000006455 Ciona savignyi ENSCSAVG00000006455 I
rfx1b Danio rerio ENSDARG00000075904 I
RFX8 Dasypus novemcinctus ENSDNOG00000007529 I
ENSECAG00000008397 Equus caballus ENSECAG00000008397 N
RFX8 Felis catus ENSFCAG00000027253 I
RFX8 Homo sapiens ENSG00000196460 I
ENSGALG00000016780 Gallus gallus ENSGALG00000016780 I
RFX8 Gorilla gorilla ENSGGOG00000011918 I
ENSLACG00000022645 Latimeria chalumnae ENSLACG00000022645 I
RFX8 Loxodonta africana ENSLAFG00000011754 I
RFX8 Meleagris gallopavo ENSMGAG00000014805 I
ENSMICG00000003899 Microcebus murinus ENSMICG00000003899 I
RFX8 Myotis lucifugus ENSMLUG00000017785 I
RFX8 Macaca mulatta ENSMMUG00000030702 I
RFX8 Monodelphis domestica ENSMODG00000025480 I
Rfx8 Mus musculus ENSMUSG00000057173 I
ENSOARG00000013205 Ovis aries ENSOARG00000013205 I
RFX8 Oryctolagus cuniculus ENSOCUG00000017895 I
RFX8 Otolemur garnettii ENSOGAG00000033445 I
ENSP00000366022-D1 Bos grunniens ENSP00000366022-D1 I
ENSPPYG00000012106 Pongo abelii ENSPPYG00000012106 I
ENSPSIG00000017366 Pelodiscus sinensis ENSPSIG00000017366 I
RFX8 Pan troglodytes ENSPTRG00000012293 I
Rfx8 Rattus norvegicus ENSRNOG00000058243 I
RFX8 Sus scrofa ENSSSCG00000008165 I
ENSSTOG00000005252 Ictidomys tridecemlineatus ENSSTOG00000005252 I
HelroG70386 Helobdella robusta HelroG70386 I
maker-nMf.1.1.scaf03280-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03280-augustus-gene-0.7 I
MhA1_Contig1476.frz3.gene5 Meloidogyne hapla MhA1_Contig1476.frz3.gene5 I
Minc08233 Meloidogyne incognita Minc08233 I
Myotis_brandtii_RFX8_10001592 Myotis brandtii Myotis_brandtii_RFX8_10001592 I
PHUM046580 Pediculus humanus PHUM046580 D
PTSG_10225 Salpingoeca rosetta PTSG_10225 I
snap_masked-nMf.1.1.scaf12121-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf12121-processed-gene-0.2 I
XP_002167174.1 Hydra magnipapillata XP_002167174.1 I