AGL27 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G77080 T252862_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00		 Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.851 0.851
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.851 0.851
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G77080.11 MADS box 10 56
AT1G77080.12 MADS box 10 56
AT1G77080.2 MADS box 10 56
AT1G77080.4 MADS box 10 56
AT1G77080.5 MADS box 10 56
AT1G77080.8 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.979
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.957
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.957
MAF3 Arabidopsis thaliana AT5G65060 I 0.894
AGL31 Arabidopsis thaliana AT5G65050 I 0.894
Bra024350 Brassica rapa Bra024350 I 0.872
Bo3g100570 Brassica oleracea Bo3g100570 I 0.872
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.872
Bra031888 Brassica rapa Bra031888 I 0.872
Bra028599 Brassica rapa Bra028599 I 0.851
FLC Arabidopsis lyrata scaffold_601028.1 I 0.851
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.851
FLC Arabidopsis thaliana AT5G10140 D 0.851
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.851
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.851
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.851
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.851
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.851
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.851
Bra009055 Brassica rapa Bra009055 I 0.851
Bo2g166500 Brassica oleracea Bo2g166500 I 0.851
Bo9g173370 Brassica oleracea Bo9g173370 I 0.830
Bo9g173400 Brassica oleracea Bo9g173400 I 0.809
Bra031884 Brassica rapa Bra031884 I 0.809
Bra006051 Brassica rapa Bra006051 I 0.809
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.809
Bo13628s010 Brassica oleracea Bo13628s010 I 0.809
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.787
Bra024351 Brassica rapa Bra024351 I 0.787
Bo01054s010 Brassica oleracea Bo01054s010 I 0.787
MAF5 Arabidopsis thaliana AT5G65080 I 0.787
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.787
Bra031886 Brassica rapa Bra031886 I 0.787
MAF4 Arabidopsis thaliana AT5G65070 I 0.787
Bo3g005470 Brassica oleracea Bo3g005470 I 0.766
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.766
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
Bra022771 Brassica rapa Bra022771 I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.745
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.745
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.723
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.723
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.702
Aquca_005_00633 Aquilegia coerulea Aquca_005_00633 I 0.702
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.702
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.702
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.702
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.702
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.702
Aquca_003_00853 Aquilegia coerulea Aquca_003_00853 I 0.702