Cagra.0917s0078 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.0917s0078 T257667_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.792 0.792
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.792 0.792
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.792 0.792
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0917s0078.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.917
MAF5 Arabidopsis thaliana AT5G65080 I 0.915
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.896
Bo01054s010 Brassica oleracea Bo01054s010 I 0.875
Bra031884 Brassica rapa Bra031884 I 0.872
Bo3g100540 Brassica oleracea Bo3g100540 I 0.872
Bra024351 Brassica rapa Bra024351 I 0.872
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.854
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.833
MAF4 Arabidopsis thaliana AT5G65070 I 0.833
Bra031886 Brassica rapa Bra031886 I 0.830
Bo3g100570 Brassica oleracea Bo3g100570 I 0.809
Bra024350 Brassica rapa Bra024350 I 0.809
Bra009055 Brassica rapa Bra009055 I 0.792
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.792
FLC Arabidopsis thaliana AT5G10140 D 0.792
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.792
Bra006051 Brassica rapa Bra006051 I 0.792
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.792
FLC Arabidopsis lyrata scaffold_601028.1 I 0.792
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.771
Bra028599 Brassica rapa Bra028599 I 0.771
Bo3g005470 Brassica oleracea Bo3g005470 I 0.771
Bo9g173370 Brassica oleracea Bo9g173370 I 0.771
Bra022771 Brassica rapa Bra022771 I 0.750
Bo9g173400 Brassica oleracea Bo9g173400 I 0.750
Bo3g024250 Brassica oleracea Bo3g024250 I 0.750
Bo13628s010 Brassica oleracea Bo13628s010 I 0.750
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
AGL27 Arabidopsis thaliana AT1G77080 D 0.723
AGL31 Arabidopsis thaliana AT5G65050 I 0.723
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.723
Bra031888 Brassica rapa Bra031888 I 0.723
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.708
Bra007324 Brassica rapa Bra007324 I 0.708
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.708
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.708
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
Bo8g091790 Brassica oleracea Bo8g091790 I 0.708
MAF3 Arabidopsis thaliana AT5G65060 I 0.702