CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra031884
(
Brassica rapa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bra031884
T253350_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.809
0.809
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.809
0.809
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.809
0.809
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.809
0.809
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.702
0.702
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.702
0.702
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.702
0.702
Q9ST54_MALDO
M11029_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.702
0.702
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.702
0.702
O82697_MALDO
M11020_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.702
0.702
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.702
0.702
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.702
0.702
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra031884.1-P
MADS box
10
56
RIENKSSRQVTFCKRRNGLMKKARQLSILCESSVALLIVSSTGKLYS
Links
Other
MADS box
family TFs
Other
Brassica rapa
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy