GSMUA_Achr3G20280_001 (Musa acuminata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GSMUA_Achr3G20280_001 T254373_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.917 0.917
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.917 0.917
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.917 0.917
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.750 0.750
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.729 0.729
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.729 0.729
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P20280_001 MADS box 10 57

Links

Other MADS box family TFs
Other Musa acuminata TFs

1082 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL18 Arabidopsis thaliana AT3G57390 I 0.792
Bo4g111230 Brassica oleracea Bo4g111230 I 0.729
Bo6g072840 Brassica oleracea Bo6g072840 I 0.812
Bo7g003660 Brassica oleracea Bo7g003660 N 0.000
Bo8g091790 Brassica oleracea Bo8g091790 I 0.792
Bra003278 Brassica rapa Bra003278 I 0.812
Bra005545 Brassica rapa Bra005545 N 0.000
Bra007324 Brassica rapa Bra007324 I 0.792
Bra014628 Brassica rapa Bra014628 I 0.750
Bra040348 Brassica rapa Bra040348 N 0.000
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.792
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.792
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
TCM_024579 Theobroma cacao TCM_024579 I 0.708