CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HMEL017830 *(Heliconius melpomene)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	HMEL017830	T254456_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
bs M03915_2.00	Drosophila melanogaster	NCCWTATAWGGN	NCCWTATAWGGN	SELEX Nitta et al.(2015) bs_1	0.929	0.929
bs M03916_2.00	Drosophila melanogaster	NCCWTAHAWGGH	DCCWTDTAWGGN	SELEX Nitta et al.(2015) bs_2	0.929	0.929
srfA M02283_2.00	Dictyostelium discoideum	MYDWWWNNRD	HYNNWWWHRK	PBM Weirauch et al.(2014) pTH5539	0.893	0.893
Srf M00178_2.00	Mus musculus	NNDDWWHHNN	NNDDWWHHNN	PBM Badis et al.(2009) Srf_3509	0.893	0.893
SRF M03341_2.00	Homo sapiens	DCCWTATATGGT	ACCATATAWGGH	SELEX Jolma et al.(2013) SRF_1	0.893	0.893
SRF M03342_2.00	Homo sapiens	TKHCCWTATATGGKMA	TKMCCATATAWGGDMA	SELEX Jolma et al.(2013) SRF_2	0.893	0.893
SRF M05553_2.00	Homo sapiens	CCNTANAWGG	CCWTNTANGG	SELEX Yin et al.(2017) SRF_eDBD_HT-SELEX	0.893	0.893
SRF M07981_2.00	Homo sapiens	NNNWDNCCAWAWAWGGNVD	HBNCCWTWTWTGGNHWNNN	ChIP-seq Gerstein et al.(2012) GM12878_SRF_HudsonAlpha	0.893	0.893
SRF M07982_2.00	Homo sapiens	CCAWATAAGGNMAD	HTKNCCTTATWTGG	ChIP-seq Gerstein et al.(2012) H1-hESC_SRF_HudsonAlpha	0.893	0.893
SRF M07983_2.00	Homo sapiens	NNWNNCCAWAWAWGGNVD	HBNCCWTWTWTGGNNWNN	ChIP-seq Gerstein et al.(2012) HepG2_SRF_HudsonAlpha	0.893	0.893
SRF M07984_2.00	Homo sapiens	GNCCAWATADGGHMANN	NNTKDCCHTATWTGGNC	ChIP-seq Gerstein et al.(2012) K562_SRF_HudsonAlpha	0.893	0.893
SRF M09249_2.00	Homo sapiens	HNWBVCCAWAWAWGGNRR	YYNCCWTWTWTGGBVWND	Misc Kulakovskiy et al.(2013) SRF_HUMAN.H11MO.0.A	0.893	0.893
Srf M09254_2.00	Mus musculus	NWDVCCAWAWAWGGVMR	YKBCCWTWTWTGGBHWN	Misc Kulakovskiy et al.(2013) SRF_MOUSE.H11MO.0.A	0.893	0.893
Srf M09598_2.00	Mus musculus	CCWWATWWGGNH	DNCCWWATWWGG	Misc Heinz et al.(2010) PUER-Srf_Sullivan_et_al.	0.893	0.893
SRF M10947_2.00	Homo sapiens	MNBWCCWTATAWGGGCAT	ATGCCCWTATAWGGWVNK	Transfac Matys et al.(2006) V$SRF_01	0.893	0.893
SRF M10948_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_02	0.893	0.893
SRF M10949_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_03	0.893	0.893
SRF M10950_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_09	0.893	0.893
SRF M10951_2.00	Homo sapiens	DCCWTATAWGGVSHB	VDSBCCWTATAWGGH	Transfac Matys et al.(2006) V$SRF_C	0.893	0.893
SRF M10952_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_Q3	0.893	0.893
SRF M10953_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_Q4	0.893	0.893
SRF M10954_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_Q5_01	0.893	0.893
SRF M10955_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRF_Q5_02	0.893	0.893
SRF M10956_2.00	Homo sapiens	BNCCAWATAWGGVN	NBCCWTATWTGGNV	Transfac Matys et al.(2006) V$SRF_Q6	0.893	0.893
SRF M05554_2.00	Homo sapiens	CCNTAYAWGG	CCWTRTANGG	SELEX Yin et al.(2017) SRF_eDBD_Methyl-HT-SELEX	0.893	0.893
unc-120 M00684_2.00	Caenorhabditis elegans	CHWAWWDGG	CCHWWTWDG	PBM Narasimhan et al.(2015) pTH10822	0.857	0.857
MCM1 M01558_2.00	Saccharomyces cerevisiae	YNNWWNNRGN	NCYNNWWNNR	PBM Zhu et al.(2009) Mcm1	0.750	0.750
MCM1 M08589_2.00	Saccharomyces cerevisiae	HNHTWCCBDWWHVGGAHDHN	NDHDTCCBDWWHVGGWADND	Misc DeBoer et al.(2011) YMR043W_831	0.750	0.750
MCM1 M10990_2.00	Saccharomyces cerevisiae	WNDCCYAAWNNGGWMW	WKWCCNNWTTRGGHNW	Transfac Matys et al.(2006) F$MCM1_01	0.750	0.750
MCM1 M10991_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$MCM1_02	0.750	0.750
MCM1 M10992_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$MCM1_Q6	0.750	0.750
MCM1 M08458_2.00	Saccharomyces cerevisiae	TTCCYRAWNNGG	CCNNWTYRGGAA	COMPILED Mathelier et al.(2014) MA0331.1	0.750	0.750
For this family, TFs with SR scores > 0.700* will likely have a similar motif*