CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HMEL017830
(
Heliconius melpomene
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
HMEL017830
T254456_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.929
0.929
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.929
0.929
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.893
0.893
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN
NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.893
0.893
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT
ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.893
0.893
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.893
0.893
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG
CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.893
0.893
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.893
0.893
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.893
0.893
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.893
0.893
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.893
0.893
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.893
0.893
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.893
0.893
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.893
0.893
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.893
0.893
SRF
M10948_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.893
0.893
SRF
M10949_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.893
0.893
SRF
M10950_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.893
0.893
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.893
0.893
SRF
M10952_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.893
0.893
SRF
M10953_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.893
0.893
SRF
M10954_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.893
0.893
SRF
M10955_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.893
0.893
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.893
0.893
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG
CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.893
0.893
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.857
0.857
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.750
0.750
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.750
0.750
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.750
0.750
MCM1
M10991_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.750
0.750
MCM1
M10992_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.750
0.750
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HMEL017830-PA
MADS box
21
48
ENAYELSTLTGTQVMLLVASETGHVYTF
Links
Other
MADS box
family TFs
Other
Heliconius melpomene
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008720
Aedes aegypti
AAEL008720
I
1.000
AAEL010926
Aedes aegypti
AAEL010926
I
1.000
CLEC013390
Cimex lectularius
CLEC013390
I
0.964
ADAC008363
Anopheles darlingi
ADAC008363
I
0.963
MESCA001358
Megaselia scalaris
MESCA001358
I
0.963
SINV23954
Solenopsis invicta
SINV23954
I
0.963
ACHR000964
Anopheles christyi
ACHR000964
I
0.963
ADIR000346
Anopheles dirus
ADIR000346
I
0.963
AFUN006147
Anopheles funestus
AFUN006147
I
0.963
ASIS007770
Anopheles sinensis
ASIS007770
I
0.963
ASTEI07120
Anopheles stephensi
ASTEI07120
I
0.963
SRF
Gorilla gorilla
ENSGGOG00000006293
I
0.962
ENSGMOG00000001540
Gadus morhua
ENSGMOG00000001540
I
0.962
ENSOPRG00000002509
Ochotona princeps
ENSOPRG00000002509
I
0.962
SRF
Vicugna pacos
ENSVPAG00000008912
I
0.962
Brh_R011000
Buceros rhinoceros
Brh_R011000
I
0.962
ANCDUO_04431
Ancylostoma duodenale
ANCDUO_04431
I
0.962
HPLM_0000743501
Haemonchus placei
HPLM_0000743501
I
0.962
LCUP011663
Lucilia cuprina
LCUP011663
I
0.931
MCINX015635
Melitaea cinxia
MCINX015635
I
0.929
AARA006325
Anopheles arabiensis
AARA006325
I
0.929
ACOM041693
Anopheles coluzzii
ACOM041693
I
0.929
AEPI007010
Anopheles epiroticus
AEPI007010
I
0.929
AFAF013563
Anopheles farauti
AFAF013563
I
0.929
AMIN001258
Anopheles minimus
AMIN001258
I
0.929
AQUA001308
Anopheles quadriannulatus
AQUA001308
I
0.929
Hba_21368
Heterorhabditis bacteriophora
Hba_21368
I
0.929
SRF
Cavia porcellus
ENSCPOG00000022327
I
0.926
ENSFALG00000000878
Ficedula albicollis
ENSFALG00000000878
I
0.926
SRF
Loxodonta africana
ENSLAFG00000010278
I
0.926
ENSMLUG00000008828
Myotis lucifugus
ENSMLUG00000008828
I
0.926
SRF
Taeniopygia guttata
ENSTGUG00000004738
I
0.926
Aan_R005414
Calypte anna
Aan_R005414
I
0.926
Afo_R000461
Aptenodytes forsteri
Afo_R000461
I
0.926
Gfo_R009695
Geospiza fortis
Gfo_R009695
I
0.926
TELCIR_12851
Teladorsagia circumcincta
TELCIR_12851
I
0.926
BGIBMGA001384
Bombyx mori
BGIBMGA001384
I
0.897
HHAL001485-PA
Halyomorpha halys
HHAL001485-PA
I
0.897
AATE011966
Anopheles atroparvus
AATE011966
I
0.897
ENSOARG00000005757
Ovis aries
ENSOARG00000005757
I
0.893
ENSPFOG00000018770
Poecilia formosa
ENSPFOG00000018770
I
0.893
O9G_005180
Rozella allomycis
O9G_005180
I
0.893
TELCIR_03792
Teladorsagia circumcincta
TELCIR_03792
I
0.893
SRF
Erinaceus europaeus
ENSEEUG00000005614
I
0.885
SRF
Sorex araneus
ENSSARG00000003401
I
0.885
LLOJ005985
Lutzomyia longipalpis
LLOJ005985
I
0.867
Cmyd_10009988
Chelonia mydas
Cmyd_10009988
I
0.862
ENSP00000265354
Macaca fascicularis
ENSP00000265354
I
0.833
BXY_0217000
Bursaphelenchus xylophilus
BXY_0217000
I
0.828
AGAP010512
Anopheles gambiae
AGAP010512
I
0.818
Myotis_brandtii_SRF_10026135
Myotis brandtii
Myotis_brandtii_SRF_10026135
I
0.806
Ogr17973
Ophisaurus gracilis
Ogr17973
I
0.806
RO3G_07165
Rhizopus oryzae
RO3G_07165
I
0.793
CpipJ_CPIJ008335
Culex pipiens
CpipJ_CPIJ008335
I
0.788
CPIJ008335
Culex quinquefasciatus
CPIJ008335
I
0.788
SNOG_07763
Stagonospora nodorum
SNOG_07763
I
0.759
AWRI1499_3592
Brettanomyces bruxellensis
AWRI1499_3592
I
0.759
SNOG_07764
Phaeosphaeria nodorum
SNOG_07764
I
0.759
fgenesh1_kg.C_scaffold_2000029
Cochliobolus heterostrophus C5
fgenesh1_kg.C_scaffold_2000029
I
0.759
AALB009948
Anopheles albimanus
AALB009948
I
0.743
ACUA004576
Anopheles culicifacies
ACUA004576
I
0.722