Gfo_R009695 (Geospiza fortis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gfo_R009695 T256999_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009695 MADS box 1 27

Links

Other MADS box family TFs
Other Geospiza fortis TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRF Cavia porcellus ENSCPOG00000022327 I 1.000
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 1.000
SRF Gorilla gorilla ENSGGOG00000006293 I 1.000
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 1.000
SRF Loxodonta africana ENSLAFG00000010278 I 1.000
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 1.000
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 1.000
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 1.000
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 1.000
SRF Taeniopygia guttata ENSTGUG00000004738 I 1.000
SRF Vicugna pacos ENSVPAG00000008912 I 1.000
Aan_R005414 Calypte anna Aan_R005414 I 1.000
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 1.000
Brh_R011000 Buceros rhinoceros Brh_R011000 I 1.000
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.963
O9G_005180 Rozella allomycis O9G_005180 I 0.963
SINV23954 Solenopsis invicta SINV23954 I 0.963
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I 0.963
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.963
AAEL008720 Aedes aegypti AAEL008720 I 0.926
AAEL010926 Aedes aegypti AAEL010926 I 0.926
ACEP12187 Atta cephalotes ACEP12187 I 0.926
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.926
ADAC008363 Anopheles darlingi ADAC008363 I 0.926
AGAP010512 Anopheles gambiae AGAP010512 I 0.926
CapteG221100 Capitella teleta CapteG221100 I 0.926
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.926
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.926
srfB Dictyostelium discoideum DDB_G0282835 I 0.926
EFV60876 Trichinella spiralis EFV60876 I 0.926
bs Drosophila melanogaster FBgn0004101 D 0.926
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.926
GF11392 Drosophila ananassae FBgn0088432 I 0.926
GG22961 Drosophila erecta FBgn0115118 I 0.926
GH20989 Drosophila grimshawi FBgn0128451 I 0.926
GI21322 Drosophila mojavensis FBgn0144052 I 0.926
GL20046 Drosophila persimilis FBgn0157643 I 0.926
GM11854 Drosophila sechellia FBgn0166795 I 0.926
GD11852 Drosophila simulans FBgn0183591 I 0.926
GJ21595 Drosophila virilis FBgn0208714 I 0.926
GK22205 Drosophila willistoni FBgn0224190 I 0.926
GE14398 Drosophila yakuba FBgn0232006 I 0.926
GB47234 Apis mellifera GB47234 I 0.926
HMEL017830 Heliconius melpomene HMEL017830 I 0.926
ISCW019966 Ixodes scapularis ISCW019966 I 0.926
L798_08800 Zootermopsis nevadensis L798_08800 I 0.926
LotgiG59850 Lottia gigantea LotgiG59850 I 0.926
MESCA001358 Megaselia scalaris MESCA001358 I 0.926
NV18787 Nasonia vitripennis NV18787 I 0.926
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.926
SMAR003014 Strigamia maritima SMAR003014 I 0.926
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.926
TC004911 Tribolium castaneum TC004911 I 0.926
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.926
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.926
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.926
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.926
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.926
AALB009948 Anopheles albimanus AALB009948 I 0.926
AARA006325 Anopheles arabiensis AARA006325 I 0.926
ACHR000964 Anopheles christyi ACHR000964 I 0.926
ACOM041693 Anopheles coluzzii ACOM041693 I 0.926
ACUA004576 Anopheles culicifacies ACUA004576 I 0.926
ADIR000346 Anopheles dirus ADIR000346 I 0.926
AEPI007010 Anopheles epiroticus AEPI007010 I 0.926
AFAF013563 Anopheles farauti AFAF013563 I 0.926
AFUN006147 Anopheles funestus AFUN006147 I 0.926
AMIN001258 Anopheles minimus AMIN001258 I 0.926
AQUA001308 Anopheles quadriannulatus AQUA001308 I 0.926
ASIS007770 Anopheles sinensis ASIS007770 I 0.926
ASIS013674 Anopheles sinensis ASIS013674 N 0.926
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.926
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.926
MDOA002443 Musca domestica MDOA002443 I 0.926
D917_02561 Trichinella nativa D917_02561 I 0.926
D918_07967 Trichuris suis D918_07967 I 0.926
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.926
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.926
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.926
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.926
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.923
SRF Sorex araneus ENSSARG00000003401 I 0.923
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.900
MCINX015635 Melitaea cinxia MCINX015635 I 0.893
CLEC013390 Cimex lectularius CLEC013390 I 0.893
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.889
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.889
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.889
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.889
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I 0.889
DI09_81p70 Microsporidia sp DI09_81p70 I 0.889
E5Q_02524 Mixia osmundae E5Q_02524 I 0.889
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.889
GLOTRDRAFT_42980 Gloeophyllum trabeum GLOTRDRAFT_42980 I 0.889
M408DRAFT_79374 Serendipita vermifera M408DRAFT_79374 I 0.889
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I 0.889
PIIN_00796 Piriformospora indica PIIN_00796 I 0.889
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.889
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.889
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I 0.889
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.889
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.889
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.889
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.889
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.889
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.889
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I 0.889
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I 0.889
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.889
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.889
Ogr17973 Ophisaurus gracilis Ogr17973 I 0.871
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.862
LCUP011663 Lucilia cuprina LCUP011663 I 0.862
AATE011966 Anopheles atroparvus AATE011966 I 0.862
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.857
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.857
Bcin09g06140 Botrytis cinerea Bcin09g06140 I 0.852
BGHDH14_bgh04421 Blumeria graminis BGHDH14_bgh04421 I 0.852
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I 0.852
CFIO01_12657 Colletotrichum fioriniae CFIO01_12657 I 0.852
CH063_12904 Colletotrichum higginsianum CH063_12904 I 0.852
CJA08385 Caenorhabditis japonica CJA08385 I 0.852
Cob_05053 Colletotrichum orbiculare Cob_05053 I 0.852
CSUB01_05290 Colletotrichum sublineola CSUB01_05290 I 0.852
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.852
GGTG_11623 Gaeumannomyces graminis GGTG_11623 I 0.852
GLRG_02553 Colletotrichum graminicola GLRG_02553 I 0.852
MAPG_02274 Magnaporthe poae MAPG_02274 I 0.852
MBM_07319 Marssonina brunnea MBM_07319 I 0.852
MGG_02773 Magnaporthe oryzae MGG_02773 I 0.852
MVLG_04297 Microbotryum violaceum MVLG_04297 I 0.852
OIDMADRAFT_123333 Oidiodendron maius OIDMADRAFT_123333 I 0.852
PFICI_14124 Pestalotiopsis fici PFICI_14124 I 0.852
SBOR_8145 Sclerotinia borealis SBOR_8145 I 0.852
SS1G_05588 Sclerotinia sclerotiorum SS1G_05588 I 0.852
VDAG_01770 Verticillium dahliae VDAG_01770 I 0.852
PredSwiss_CON2346.1 Pneumocystis carinii PredSwiss_CON2346.1 I 0.852
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I 0.852
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.839
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.833
RO3G_07165 Rhizopus oryzae RO3G_07165 I 0.828
HelroG137972 Helobdella robusta HelroG137972 I 0.815
J056_002827 Wallemia ichthyophaga J056_002827 I 0.815
RHTO_04199 Rhodosporidium toruloides RHTO_04199 I 0.815
sr10299 Sporisorium reilianum sr10299 I 0.815
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.815
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.793
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.793
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.793
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.793
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.778
H311_03229 Anncaliia algerae H311_03229 I 0.778
H311_03668 Anncaliia algerae H311_03668 I 0.778
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.778
NCER_102270 Nosema ceranae NCER_102270 I 0.778
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I 0.778
SLOPH_1335 Spraguea lophii SLOPH_1335 I 0.778
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.778
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.778
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I 0.758
CPIJ008335 Culex quinquefasciatus CPIJ008335 I 0.758
EHEL_071720 Encephalitozoon hellem EHEL_071720 N 0.741
EROM_071660 Encephalitozoon romaleae EROM_071660 N 0.741
MELLADRAFT_106990 Melampsora laricipopulina MELLADRAFT_106990 I 0.741
THOM_1181 Trachipleistophora hominis THOM_1181 I 0.741
TriadG59812 Trichoplax adhaerens TriadG59812 I 0.741
VCUG_02078 Vavraia culicis VCUG_02078 I 0.741
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I 0.741
SNAPOd2T00012736001 Oikopleura dioica SNAPOd2T00012736001 I 0.741
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I 0.741
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.741
L889_g24087 Steinernema feltiae L889_g24087 I 0.741
L892_g14520 Steinernema scapterisci L892_g14520 I 0.741
L893_g14743 Steinernema glaseri L893_g14743 I 0.741
L898_g9834 Steinernema monticolum L898_g9834 I 0.741
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I 0.741
RHTO_03422 Rhodosporidium toruloides RHTO_03422 I 0.704
ZBAI_03536 Zygosaccharomyces bailii ZBAI_03536 I 0.704
ZBAI_08534 Zygosaccharomyces bailii ZBAI_08534 I 0.704