Sjc_0026780 (Schistosoma japonicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Sjc_0026780 T259277_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.729 0.729
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.729 0.729
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.729 0.729
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.729 0.729
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.729 0.729
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.729 0.729
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.729 0.729
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.729 0.729
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.729 0.729
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.729 0.729
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.729 0.729
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.729 0.729
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.729 0.729
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.729 0.729
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.729 0.729
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.729 0.729
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.729 0.729
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.729 0.729
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.729 0.729
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.729 0.729
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.729 0.729
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.729 0.729
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000002523 MADS box 125 172

Links

Other MADS box family TFs
Other Schistosoma japonicum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Smp_097730 Schistosoma mansoni Smp_097730 I 0.979
A_01192 Schistosoma haematobium A_01192 I 0.979
SCUD_0000460501 Schistosoma curassoni SCUD_0000460501 I 0.979
SMRZ_0002507801 Schistosoma margrebowiei SMRZ_0002507801 I 0.979
SMTD_0001950801 Schistosoma mattheei SMTD_0001950801 I 0.979
SROB_0002013401 Schistosoma rodhaini SROB_0002013401 I 0.958
ECANG7_07506 Echinococcus canadensis ECANG7_07506 I 0.875
EmuJ_000377500 Echinococcus multilocularis EmuJ_000377500 I 0.875
HDID_0000576901 Hymenolepis diminuta HDID_0000576901 I 0.875
HmN_000858800 Hymenolepis microstoma HmN_000858800 I 0.875
HNAJ_0000775201 Hymenolepis nana HNAJ_0000775201 I 0.875
MCOS_0000609801 Mesocestoides corti MCOS_0000609801 I 0.875
TASK_0000457101 Taenia asiatica TASK_0000457101 I 0.875
TsM_000925700 Taenia solium TsM_000925700 I 0.875
TTAC_0000870401 Hydatigera taeniaeformis TTAC_0000870401 I 0.875
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I 0.833
csin112160 Clonorchis sinensis csin112160 N 0.812
T265_07052 Opisthorchis viverrini T265_07052 N 0.812
SMU15039528 Schmidtea mediterranea SMU15039528 N 0.771
SRF Gorilla gorilla ENSGGOG00000006293 I 0.769
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.769
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.769
SRF Vicugna pacos ENSVPAG00000008912 I 0.769
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.769
SPER_0002407601 Spirometra erinaceieuropaei SPER_0002407601 N 0.750
SPER_0003232401 Spirometra erinaceieuropaei SPER_0003232401 N 0.750
SSLN_0001407901 Schistocephalus solidus SSLN_0001407901 N 0.750
SRF Cavia porcellus ENSCPOG00000022327 I 0.741
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.741
SRF Loxodonta africana ENSLAFG00000010278 I 0.741
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.741
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.741
MESCA001358 Megaselia scalaris MESCA001358 I 0.741
Aan_R005414 Calypte anna Aan_R005414 I 0.741
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.741
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.741
SRF Anolis carolinensis ENSACAG00000004798 I 0.729
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.729
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.729
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.729
SRF Bos taurus ENSBTAG00000012777 I 0.729
SRF Canis familiaris ENSCAFG00000001829 I 0.729
SRF Callithrix jacchus ENSCJAG00000005223 I 0.729
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.729
srfa Danio rerio ENSDARG00000053918 I 0.729
srfb Danio rerio ENSDARG00000102867 I 0.729
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.729
SRF Equus caballus ENSECAG00000009068 I 0.729
SRF Felis catus ENSFCAG00000025180 I 0.729
SRF Homo sapiens ENSG00000112658 D 0.729
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.729
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.729
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.729
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.729
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.729
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.729
SRF Macaca mulatta ENSMMUG00000000033 I 0.729
SRF Monodelphis domestica ENSMODG00000018981 I 0.729
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.729
Srf Mus musculus ENSMUSG00000015605 D 0.729
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.729
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.729
SRF Otolemur garnettii ENSOGAG00000029623 I 0.729
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.729
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.729
SRF Oryzias latipes ENSORLG00000013036 I 0.729
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.729
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.729
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.729
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.729
SRF Pan troglodytes ENSPTRG00000018189 I 0.729
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.729
Srf Rattus norvegicus ENSRNOG00000018232 I 0.729
SRF Sus scrofa ENSSSCG00000001661 I 0.729
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.729
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.729
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.729
srfa Takifugu rubripes ENSTRUG00000011448 I 0.729
SRF Takifugu rubripes ENSTRUG00000017531 I 0.729
SRF Tursiops truncatus ENSTTRG00000007017 I 0.729
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.729
HelroG137972 Helobdella robusta HelroG137972 I 0.729
tetur02g05030 Tetranychus urticae tetur02g05030 I 0.729
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.729
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.729
srf Xenopus tropicalis XB-GENE-482036 I 0.729
srf.L Xenopus laevis XB-GENE-864819 I 0.729
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 0.714
O9G_005180 Rozella allomycis O9G_005180 I 0.714
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.710
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.708
CapteG221100 Capitella teleta CapteG221100 I 0.708
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.708
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.708
srfA Dictyostelium discoideum DDB_G0281387 D 0.708
DI09_81p70 Microsporidia sp DI09_81p70 I 0.708
EFV60876 Trichinella spiralis EFV60876 I 0.708
srf Ciona intestinalis ENSCING00000018042 I 0.708
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.708
ISCW019966 Ixodes scapularis ISCW019966 I 0.708
LotgiG59850 Lottia gigantea LotgiG59850 I 0.708
ML154140a Mnemiopsis leidyi ML154140a I 0.708
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.708
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.708
SMAR003014 Strigamia maritima SMAR003014 I 0.708
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.708
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.708
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.708
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.708
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.708
Ocbimv22020285m.g Octopus bimaculoides Ocbimv22020285m.g I 0.708
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.708
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.708
XP_002156545.1 Hydra magnipapillata XP_002156545.1 I 0.708
XP_002164692.1 Hydra magnipapillata XP_002164692.1 I 0.708
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.708
D917_02561 Trichinella nativa D917_02561 I 0.708
D918_07967 Trichuris suis D918_07967 I 0.708
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.708
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.708
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.708
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.708
ADAC008363 Anopheles darlingi ADAC008363 I 0.704
SINV23954 Solenopsis invicta SINV23954 I 0.704
ACHR000964 Anopheles christyi ACHR000964 I 0.704
ADIR000346 Anopheles dirus ADIR000346 I 0.704
AFUN006147 Anopheles funestus AFUN006147 I 0.704
ASIS007770 Anopheles sinensis ASIS007770 I 0.704
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.704
ARB_02013 Arthroderma benhamiae ARB_02013 I 0.703
TRV_05844 Trichophyton verrucosum TRV_05844 I 0.703
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700