PAS_chr4_0093 (Komagataella pastoris)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PAS_chr4_0093 T255554_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAY71320 MADS box 10 57

Links

Other MADS box family TFs
Other Komagataella pastoris TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1645_YBR182C Saccharomyces bayanus 1645_YBR182C I 0.729
1735_Multiple Saccharomyces paradoxus 1735_Multiple I 0.750
21954_YPL089C Saccharomyces mikatae 21954_YPL089C I 0.750
25226_YPL089C Saccharomyces bayanus 25226_YPL089C I 0.750
572_YBR182C Saccharomyces mikatae 572_YBR182C I 0.750
A1O1_05243 Capronia coronata A1O1_05243 I 0.729
A1O3_09529 Capronia epimyces A1O3_09529 I 0.729
A1O5_02336 Cladophialophora psammophila A1O5_02336 I 0.729
A1O7_07076 Cladophialophora yegresii A1O7_07076 I 0.729
A1O9_04901 Exophiala aquamarina A1O9_04901 I 0.729
AB03118.1 Alternaria brassicicola AB03118.1 I 0.708
AGOS_AGR198C Ashbya gossypii AGOS_AGR198C I 0.708
ARB_05322 Arthroderma benhamiae ARB_05322 I 0.729
AUEXF2481DRAFT_43803 Aureobasidium subglaciale AUEXF2481DRAFT_43803 I 0.750
Bcin05g04030 Botrytis cinerea Bcin05g04030 I 0.708
BDDG_00259 Blastomyces dermatitidis BDDG_00259 I 0.708
BOTBODRAFT_121202 Botryobasidium botryosum BOTBODRAFT_121202 I 0.729
CAGL0H05621g Candida glabrata CAGL0H05621g I 0.729
CANTEDRAFT_125008 Candida tenuis CANTEDRAFT_125008 I 0.708
CaO19.12132 Candida albicans CaO19.12132 I 0.729
CaO19.4662 Candida albicans CaO19.4662 I 0.729
CD36_41250 Candida dubliniensis CD36_41250 I 0.750
CIMG_07638 Coccidioides immitis CIMG_07638 I 0.729
CLUG_04340 Candida lusitaniae CLUG_04340 I 0.750
CLUG_04340 Clavispora lusitaniae CLUG_04340 I 0.750
COCC4DRAFT_131332 Bipolaris maydis COCC4DRAFT_131332 I 0.708
COCCADRAFT_38888 Bipolaris zeicola COCCADRAFT_38888 I 0.708
COCMIDRAFT_27992 Bipolaris oryzae COCMIDRAFT_27992 I 0.708
COCSADRAFT_191180 Bipolaris sorokiniana COCSADRAFT_191180 I 0.708
COCVIDRAFT_17132 Bipolaris victoriae COCVIDRAFT_17132 I 0.708
CORT_0E04370 Candida orthopsilosis CORT_0E04370 I 0.708
CPC735_043100 Coccidioides posadasii CPC735_043100 I 0.729
CTRG_00027 Candida tropicalis CTRG_00027 I 0.729
DEHA2B02882g Debaryomyces hansenii DEHA2B02882g I 0.729
DOTSEDRAFT_71657 Dothistroma septosporum DOTSEDRAFT_71657 I 0.708
Ecym_7060 Eremothecium cymbalariae Ecym_7060 I 0.708
MEF2A Homo sapiens ENSG00000068305 D 0.724
EPUS_00923 Endocarpon pusillum EPUS_00923 I 0.708
estExt_fgenesh1_pm.C_110082 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_110082 I 0.708
estExt_fgenesh1_pm.C_30002 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30002 I 0.708
estExt_genewise1_human.C_chr_1.10329 Pichia stipitis estExt_genewise1_human.C_chr_1.10329 I 0.750
EV44_g2988 Erysiphe necator EV44_g2988 I 0.708
F503_03505 Ophiostoma piceae uamh F503_03505 I 0.708
G210_1171 Candida maltosa G210_1171 I 0.750
G647_03030 Cladophialophora carrionii G647_03030 I 0.729
GNLVRS01_PISO0M22936g Millerozyma farinosa GNLVRS01_PISO0M22936g I 0.750
GNLVRS01_PISO0N23201g Millerozyma farinosa GNLVRS01_PISO0N23201g I 0.729
GSTUM_00008714001 Tuber melanosporum GSTUM_00008714001 I 0.708
H101_08129 Trichophyton interdigitale H101_08129 I 0.729
H102_05233 Trichophyton rubrum H102_05233 I 0.729
H105_05252 Trichophyton soudanense H105_05252 I 0.729
HCBG_00204 Histoplasma capsulatum HCBG_00204 I 0.708
HMPREF1120_02025 Exophiala dermatitidis HMPREF1120_02025 I 0.729
HMPREF1541_07944 Cyphellophora europaea HMPREF1541_07944 I 0.708
HMPREF1624_03092 Sporothrix schenckii HMPREF1624_03092 I 0.708
HPODL_00493 Ogataea parapolymorpha HPODL_00493 I 0.729
JL09_g2233 Pichia kudriavzevii JL09_g2233 I 0.708
KAFR_0E00800 Kazachstania africana KAFR_0E00800 I 0.729
KAFR_0I00730 Kazachstania africana KAFR_0I00730 I 0.708
KLLA0_E24025g Kluyveromyces lactis KLLA0_E24025g I 0.708
KLTH0E13156g Lachancea thermotolerans KLTH0E13156g I 0.729
KLTH0E13156g Kluyveromyces thermotolerans KLTH0E13156g I 0.729
KNAG_0A01830 Kazachstania naganishii KNAG_0A01830 I 0.708
Kpol_1048p48 Vanderwaltozyma polyspora Kpol_1048p48 I 0.708
Kpol_397p4 Vanderwaltozyma polyspora Kpol_397p4 I 0.708
LALA0_S04e02938g Lachancea lanzarotensis LALA0_S04e02938g I 0.750
LELG_04554 Lodderomyces elongisporus LELG_04554 I 0.750
LEMA_P028590.1 Leptosphaeria maculans LEMA_P028590.1 I 0.708
M437DRAFT_42083 Aureobasidium melanogenum M437DRAFT_42083 I 0.750
M438DRAFT_316511 Aureobasidium pullulans M438DRAFT_316511 I 0.750
MCYG_04979 Microsporum canis MCYG_04979 I 0.729
MCYG_04979 Arthroderma otae MCYG_04979 I 0.729
MGYG_07902 Microsporum gypseum MGYG_07902 I 0.729
MPH_05126 Macrophomina phaseolina MPH_05126 I 0.708
MYCFIDRAFT_72135 Pseudocercospora fijiensis MYCFIDRAFT_72135 I 0.708
NCAS_0C01980 Naumovozyma castellii NCAS_0C01980 I 0.750
NDAI_0E02700 Naumovozyma dairenensis NDAI_0E02700 I 0.750
PAAG_00645 Paracoccidioides sp lutzii PAAG_00645 I 0.708
PABG_01574 Paracoccidioides brasiliensis PABG_01574 I 0.708
PGUG_02571 Candida guilliermondii PGUG_02571 I 0.729
PGUG_02571 Meyerozyma guilliermondii PGUG_02571 I 0.729
PICST_68747 Scheffersomyces stipitis PICST_68747 I 0.750
PMAA_013140 Talaromyces marneffei PMAA_013140 I 0.708
PMAA_013140 Penicillium marneffei PMAA_013140 I 0.708
PTRG_08080 Pyrenophora triticirepentis PTRG_08080 I 0.708
PTT_15886 Pyrenophora teres PTT_15886 I 0.708
PV04_07501 Capronia semiimmersa PV04_07501 I 0.729
PV05_05426 Exophiala xenobiotica PV05_05426 I 0.729
PV06_00786 Exophiala oligosperma PV06_00786 I 0.729
PV07_11277 Cladophialophora immunda PV07_11277 I 0.729
PV08_00691 Exophiala spinifera PV08_00691 I 0.729
PV09_04800 Verruconis gallopava PV09_04800 I 0.750
PV10_07771 Exophiala mesophila PV10_07771 I 0.729
PV11_00659 Exophiala sideris PV11_00659 I 0.729
PVAR5_5878 Byssochlamys spectabilis PVAR5_5878 I 0.708
SAKL0H09416g Lachancea kluyveri SAKL0H09416g I 0.729
Scas_Contig664.4 Saccharomyces castellii Scas_Contig664.4 I 0.750
SETTUDRAFT_183592 Setosphaeria turcica SETTUDRAFT_183592 I 0.708
SKUD_178506 Saccharomyces kudriavzevii SKUD_178506 I 0.750
SKUD_205813 Saccharomyces kudriavzevii SKUD_205813 I 0.750
SNOG_15194 Stagonospora nodorum SNOG_15194 I 0.708
SPBR_01444 Sporothrix brasiliensis SPBR_01444 I 0.708
SS1G_06124 Sclerotinia sclerotiorum SS1G_06124 I 0.708
SU7_0243 Saccharomyces arboricola SU7_0243 I 0.729
SU7_3566 Saccharomyces arboricola SU7_3566 I 0.750
TBLA_0H03770 Tetrapisispora blattae TBLA_0H03770 I 0.708
TDEL_0A05090 Torulaspora delbrueckii TDEL_0A05090 I 0.708
TEQG_02757 Trichophyton equinum TEQG_02757 I 0.729
TESG_06676 Trichophyton tonsurans TESG_06676 I 0.729
THITE_2122084 Thielavia terrestris THITE_2122084 I 0.708
TPHA_0A01340 Tetrapisispora phaffii TPHA_0A01340 I 0.708
TRV_06898 Trichophyton verrucosum TRV_06898 I 0.729
TSTA_004010 Talaromyces stipitatus TSTA_004010 I 0.729
UCRNP2_3485 Neofusicoccum parvum UCRNP2_3485 I 0.708
UREG_07644 Uncinocarpus reesii UREG_07644 I 0.729
W97_01089 Coniosporium apollinis W97_01089 I 0.708
XP_002493499.1 Pichia pastoris XP_002493499.1 I 1.000
YALI0_F18788g Yarrowia lipolytica YALI0_F18788g I 0.708
SMP1 Saccharomyces cerevisiae YBR182C D 0.750
RLM1 Saccharomyces cerevisiae YPL089C D 0.750
Z517_02667 Fonsecaea pedrosoi Z517_02667 I 0.729
Z518_09438 Rhinocladiella mackenziei Z518_09438 I 0.729
Z519_11638 Cladophialophora bantiana Z519_11638 I 0.729
ZYRO0A13464g Zygosaccharomyces rouxii ZYRO0A13464g I 0.729