estExt_genewise1_human.C_chr_1.10329 (Pichia stipitis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_genewise1_human.C_chr_1.10329 T257339_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.812 0.812
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.812 0.812
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.792 0.792
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_genewise1_human.C_chr_1.10329 MADS box 10 57

Links

Other MADS box family TFs
Other Pichia stipitis TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PICST_68747 Scheffersomyces stipitis PICST_68747 I 1.000
CTRG_00027 Candida tropicalis CTRG_00027 I 0.958
DEHA2B02882g Debaryomyces hansenii DEHA2B02882g I 0.958
CLUG_04340 Candida lusitaniae CLUG_04340 I 0.938
CANTEDRAFT_125008 Candida tenuis CANTEDRAFT_125008 I 0.938
CD36_41250 Candida dubliniensis CD36_41250 I 0.938
CLUG_04340 Clavispora lusitaniae CLUG_04340 I 0.938
G210_1171 Candida maltosa G210_1171 I 0.938
GNLVRS01_PISO0N23201g Millerozyma farinosa GNLVRS01_PISO0N23201g I 0.938
CaO19.12132 Candida albicans CaO19.12132 I 0.917
CaO19.4662 Candida albicans CaO19.4662 I 0.917
CORT_0E04370 Candida orthopsilosis CORT_0E04370 I 0.917
GNLVRS01_PISO0M22936g Millerozyma farinosa GNLVRS01_PISO0M22936g I 0.917
CPAG_01728 Candida parapsilosis CPAG_01728 I 0.896
LELG_04554 Lodderomyces elongisporus LELG_04554 I 0.896
PGUG_02571 Candida guilliermondii PGUG_02571 I 0.854
NCAS_0C01980 Naumovozyma castellii NCAS_0C01980 I 0.854
PGUG_02571 Meyerozyma guilliermondii PGUG_02571 I 0.854
Scas_Contig664.4 Saccharomyces castellii Scas_Contig664.4 I 0.854
LALA0_S04e02938g Lachancea lanzarotensis LALA0_S04e02938g I 0.833
NDAI_0E02700 Naumovozyma dairenensis NDAI_0E02700 I 0.833
SAKL0H09416g Lachancea kluyveri SAKL0H09416g I 0.833
AGOS_AGR198C Ashbya gossypii AGOS_AGR198C I 0.812
Ecym_7060 Eremothecium cymbalariae Ecym_7060 I 0.812
JL09_g2233 Pichia kudriavzevii JL09_g2233 I 0.812
KLLA0_E24025g Kluyveromyces lactis KLLA0_E24025g I 0.812
SKUD_178506 Saccharomyces kudriavzevii SKUD_178506 I 0.812
SMP1 Saccharomyces cerevisiae YBR182C D 0.812
ZYRO0A13464g Zygosaccharomyces rouxii ZYRO0A13464g I 0.812
1735_Multiple Saccharomyces paradoxus 1735_Multiple I 0.812
572_YBR182C Saccharomyces mikatae 572_YBR182C I 0.812
KAFR_0I00730 Kazachstania africana KAFR_0I00730 I 0.792
KLTH0E13156g Lachancea thermotolerans KLTH0E13156g I 0.792
SKUD_205813 Saccharomyces kudriavzevii SKUD_205813 I 0.792
SU7_0243 Saccharomyces arboricola SU7_0243 I 0.792
SU7_3566 Saccharomyces arboricola SU7_3566 I 0.792
TDEL_0A05090 Torulaspora delbrueckii TDEL_0A05090 I 0.792
RLM1 Saccharomyces cerevisiae YPL089C D 0.792
1645_YBR182C Saccharomyces bayanus 1645_YBR182C I 0.792
21954_YPL089C Saccharomyces mikatae 21954_YPL089C I 0.792
25226_YPL089C Saccharomyces bayanus 25226_YPL089C I 0.792
KLTH0E13156g Kluyveromyces thermotolerans KLTH0E13156g I 0.792
CAGL0H05621g Candida glabrata CAGL0H05621g I 0.771
KAFR_0E00800 Kazachstania africana KAFR_0E00800 I 0.771
ACLA_036490 Aspergillus clavatus CADACLAG00003970 I 0.750
CADAFLAG00001438 Aspergillus flavus CADAFLAG00001438 I 0.750
AFUA_3G08520 Aspergillus fumigatus CADAFUAG00005633 I 0.750
CADANGAG00002744 Aspergillus niger CADANGAG00002744 I 0.750
ANIA_02984 Aspergillus nidulans CADANIAG00010096 I 0.750
CADAORAG00003304 Aspergillus oryzae CADAORAG00003304 I 0.750
ATEG_01619 Aspergillus terreus CADATEAG00002690 I 0.750
NFIA_068610 Neosartorya fischeri CADNFIAG00006321 I 0.750
EURHEDRAFT_408541 Aspergillus ruber EURHEDRAFT_408541 I 0.750
HPODL_00493 Ogataea parapolymorpha HPODL_00493 I 0.750
KNAG_0A01830 Kazachstania naganishii KNAG_0A01830 I 0.750
Kpol_1048p48 Vanderwaltozyma polyspora Kpol_1048p48 I 0.750
PAAG_00645 Paracoccidioides sp lutzii PAAG_00645 I 0.750
PABG_01574 Paracoccidioides brasiliensis PABG_01574 I 0.750
PAS_chr4_0093 Komagataella pastoris PAS_chr4_0093 I 0.750
YALI0_F18788g Yarrowia lipolytica YALI0_F18788g I 0.750
fgenesh1_pm.00866_#_723 Aspergillus carbonarius fgenesh1_pm.00866_#_723 I 0.750
XP_002493499.1 Pichia pastoris XP_002493499.1 I 0.750
SNOG_15194 Stagonospora nodorum SNOG_15194 I 0.729
AUEXF2481DRAFT_43803 Aureobasidium subglaciale AUEXF2481DRAFT_43803 I 0.729
Bcin05g04030 Botrytis cinerea Bcin05g04030 I 0.729
BDDG_00259 Blastomyces dermatitidis BDDG_00259 I 0.729
BOTBODRAFT_121202 Botryobasidium botryosum BOTBODRAFT_121202 I 0.729
COCC4DRAFT_131332 Bipolaris maydis COCC4DRAFT_131332 I 0.729
COCCADRAFT_38888 Bipolaris zeicola COCCADRAFT_38888 I 0.729
COCMIDRAFT_27992 Bipolaris oryzae COCMIDRAFT_27992 I 0.729
COCSADRAFT_191180 Bipolaris sorokiniana COCSADRAFT_191180 I 0.729
COCVIDRAFT_17132 Bipolaris victoriae COCVIDRAFT_17132 I 0.729
DOTSEDRAFT_71657 Dothistroma septosporum DOTSEDRAFT_71657 I 0.729
EPUS_00923 Endocarpon pusillum EPUS_00923 I 0.729
EV44_g2988 Erysiphe necator EV44_g2988 I 0.729
F503_03505 Ophiostoma piceae uamh F503_03505 I 0.729
GSTUM_00008714001 Tuber melanosporum GSTUM_00008714001 I 0.729
HCBG_00204 Histoplasma capsulatum HCBG_00204 I 0.729
HMPREF1541_07944 Cyphellophora europaea HMPREF1541_07944 I 0.729
HMPREF1624_03092 Sporothrix schenckii HMPREF1624_03092 I 0.729
KUCA_T00000739001 Kuraishia capsulata KUCA_T00000739001 I 0.729
LEMA_P028590.1 Leptosphaeria maculans LEMA_P028590.1 I 0.729
M437DRAFT_42083 Aureobasidium melanogenum M437DRAFT_42083 I 0.729
M438DRAFT_316511 Aureobasidium pullulans M438DRAFT_316511 I 0.729
MPH_05126 Macrophomina phaseolina MPH_05126 I 0.729
MYCFIDRAFT_72135 Pseudocercospora fijiensis MYCFIDRAFT_72135 I 0.729
PCH_Pc20g03270 Penicillium rubens PCH_Pc20g03270 I 0.729
PDE_01919 Penicillium oxalicum PDE_01919 I 0.729
PDIP_09010 Penicillium digitatum PDIP_09010 I 0.729
PEX1_000400 Penicillium expansum PEX1_000400 I 0.729
PITC_001660 Penicillium italicum PITC_001660 I 0.729
PMAA_013140 Talaromyces marneffei PMAA_013140 I 0.729
PTRG_08080 Pyrenophora triticirepentis PTRG_08080 I 0.729
PTT_15886 Pyrenophora teres PTT_15886 I 0.729
PV09_04800 Verruconis gallopava PV09_04800 I 0.729
PVAR5_5878 Byssochlamys spectabilis PVAR5_5878 I 0.729
SETTUDRAFT_183592 Setosphaeria turcica SETTUDRAFT_183592 I 0.729
SPBR_01444 Sporothrix brasiliensis SPBR_01444 I 0.729
SS1G_06124 Sclerotinia sclerotiorum SS1G_06124 I 0.729
THITE_2122084 Thielavia terrestris THITE_2122084 I 0.729
U727_00434011531 Penicillium solitum U727_00434011531 I 0.729
UCRNP2_3485 Neofusicoccum parvum UCRNP2_3485 I 0.729
W97_01089 Coniosporium apollinis W97_01089 I 0.729
WALSEDRAFT_59614 Wallemia sebi WALSEDRAFT_59614 N 0.729
estExt_fgenesh1_pm.C_110082 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_110082 I 0.729
estExt_fgenesh1_pm.C_30002 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30002 I 0.729
AB03118.1 Alternaria brassicicola AB03118.1 I 0.729
Pc20g03270 Penicillium chrysogenum Pc20g03270 I 0.729
PMAA_013140 Penicillium marneffei PMAA_013140 I 0.729
CIMG_07638 Coccidioides immitis CIMG_07638 I 0.708
MCYG_04979 Microsporum canis MCYG_04979 I 0.708
A1O1_05243 Capronia coronata A1O1_05243 I 0.708
A1O3_09529 Capronia epimyces A1O3_09529 I 0.708
A1O5_02336 Cladophialophora psammophila A1O5_02336 I 0.708
A1O7_07076 Cladophialophora yegresii A1O7_07076 I 0.708
A1O9_04901 Exophiala aquamarina A1O9_04901 I 0.708
ARB_05322 Arthroderma benhamiae ARB_05322 I 0.708
BGHDH14_bghG002741000001001 Blumeria graminis BGHDH14_bghG002741000001001 I 0.708
CFIO01_13635 Colletotrichum fioriniae CFIO01_13635 I 0.708
CH063_12469 Colletotrichum higginsianum CH063_12469 I 0.708
CMQ_3522 Grosmannia clavigera CMQ_3522 I 0.708
Cob_13332 Colletotrichum orbiculare Cob_13332 I 0.708
CPC735_043100 Coccidioides posadasii CPC735_043100 I 0.708
CSUB01_02910 Colletotrichum sublineola CSUB01_02910 I 0.708
G647_03030 Cladophialophora carrionii G647_03030 I 0.708
GLRG_00647 Colletotrichum graminicola GLRG_00647 I 0.708
GMDG_00759 Pseudogymnoascus destructans GMDG_00759 I 0.708
H101_08129 Trichophyton interdigitale H101_08129 I 0.708
H102_05233 Trichophyton rubrum H102_05233 I 0.708
H105_05252 Trichophyton soudanense H105_05252 I 0.708
HMPREF1120_02025 Exophiala dermatitidis HMPREF1120_02025 I 0.708
MCYG_04979 Arthroderma otae MCYG_04979 I 0.708
MGYG_07902 Microsporum gypseum MGYG_07902 I 0.708
Mycgr3G71585 Zymoseptoria tritici Mycgr3G71585 I 0.708
NEUTE1DRAFT_126496 Neurospora tetrasperma NEUTE1DRAFT_126496 I 0.708
OIDMADRAFT_105313 Oidiodendron maius OIDMADRAFT_105313 I 0.708
PFICI_06921 Pestalotiopsis fici PFICI_06921 I 0.708
PODANS_1_6600 Podospora anserina PODANS_1_6600 I 0.708
PV04_07501 Capronia semiimmersa PV04_07501 I 0.708
PV05_05426 Exophiala xenobiotica PV05_05426 I 0.708
PV06_00786 Exophiala oligosperma PV06_00786 I 0.708
PV07_11277 Cladophialophora immunda PV07_11277 I 0.708
PV08_00691 Exophiala spinifera PV08_00691 I 0.708
PV10_07771 Exophiala mesophila PV10_07771 I 0.708
PV11_00659 Exophiala sideris PV11_00659 I 0.708
SAPIO_CDS1437 Scedosporium apiospermum SAPIO_CDS1437 I 0.708
SBOR_4659 Sclerotinia borealis SBOR_4659 I 0.708
SEPMUDRAFT_148874 Sphaerulina musiva SEPMUDRAFT_148874 I 0.708
SMAC_05802 Sordaria macrospora SMAC_05802 I 0.708
TBLA_0H03770 Tetrapisispora blattae TBLA_0H03770 I 0.708
TEQG_02757 Trichophyton equinum TEQG_02757 I 0.708
TESG_06676 Trichophyton tonsurans TESG_06676 I 0.708
TRV_06898 Trichophyton verrucosum TRV_06898 I 0.708
TSTA_004010 Talaromyces stipitatus TSTA_004010 I 0.708
UCRPA7_1246 Togninia minima UCRPA7_1246 I 0.708
UREG_07644 Uncinocarpus reesii UREG_07644 I 0.708
V499_02013 Pseudogymnoascus pannorum V499_02013 I 0.708
V565_186740 Rhizoctonia solani V565_186740 I 0.708
Z517_02667 Fonsecaea pedrosoi Z517_02667 I 0.708
Z518_09438 Rhinocladiella mackenziei Z518_09438 I 0.708
Z519_11638 Cladophialophora bantiana Z519_11638 I 0.708
estExt_fgenesh2_pg.C_20596 Neurospora discreta estExt_fgenesh2_pg.C_20596 I 0.708
NCU02558 Neurospora crassa NCU02558 I 0.708